TSS: Hg 242897.1: Difference between revisions

Revision as of 16:26, 17 June 2021

Basic information about the TSS

TSS ID:	hg_242897.1
Species:	human
Chr:	chr8

Start:	100106157
End:	100106158
Strand:	-

TSS cluster detected^*

* The number of TSS cluster called studies (maximum 16)

Gene and protein annotation

Transcript_name:	ENST00000520348.5 ENST00000521399.5 ENST00000521127.1 NR_002599 NR_152599 NR_152598 NR_152600 AK057116
Distance:	-25
GeneID:	641638
HGNC/MGI_ID:	HGNC:32965
UniProt_ID:

Gene_name:	small nucleolar RNA host gene 6
Gene_symbol:	SNHG6
Gene_synonyms:	HBII-276HG NCRNA00058 U87HG
Gene_source:	HGNC:32965

TATA-Box annotation

Distance to TSS:	-109
Nearest PromoterID:	NM_001286692
Entrez ID:	26166
Nearest Unigene:	Hs.120021
Nearest Refseq:	NM_015668
Nearest Ensembl:	ENSG00000132554
Gene Name:	small nucleolar RNA host gene 6
Gene Alias:	CT145\|PRTD-NY2
Gene Description:	regulator of G protein signaling 22
Gene Type:	protein-coding
CpG%:	0.11
GC%:	0.726368
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 1: / Line 1: @@
 {{TSSDetail
 |PRTD-NY2=
-|all_trans=ENST00000360863.10:42 ENST00000617334.1:42 NM_001286692:42 NM_015668:42 uc003yjb.2:42 uc064ozd.1:42 BC092411:42 ENST00000519725.5:158 ENST00000518719.1:158 uc064ozi.1:158 uc064ozr.1:158 BC047060:158 ENST00000519408.5:-159 uc064ozo.1:-159 ENST00000523437.5:196 uc003yjc.3:196 AK292559:196 BC036665:198 AY009106:215 KJ906113:234 KJ898604:236
+|all_trans=ENST00000520348.5:-25 ENST00000521399.5:-25 ENST00000521127.1:-25 NR_002599:-25 NR_152599:-25 NR_152598:-25 NR_152600:-25 AK057116:-25 AY264285:-26 ENST00000520944.5:-80
 |chr=chr8
 |cpg_percent=0.11
-|distance=42
+|distance=-25
-|distance_to_tss=-42
+|distance_to_tss=-109
 |end=100106158
 |end_of_center_position=66925515
 |entrez_id=26166
 |gc_percent=0.726368
-|gene_alias=CT145
+|gene_alias=CT145{{!}}PRTD-NY2
-|gene_description=regulator of G-protein signaling 22
+|gene_description=regulator of G protein signaling 22
-|gene_id=26166
+|gene_id=641638
-|gene_name=regulator of G-protein signaling 22
+|gene_name=small nucleolar RNA host gene 6
-|gene_source=HGNC:24499
+|gene_source=HGNC:32965
-|gene_symbol=RGS22
+|gene_symbol=SNHG6
-|gene_synonyms=CT145 DKFZP434I092 PRTD-NY2
+|gene_synonyms=HBII-276HG NCRNA00058 U87HG
 |gene_type=protein-coding
-|hgnc_mgi_id=HGNC:24499
+|hgnc_mgi_id=HGNC:32965
 |nearest_ensembl=ENSG00000132554
-|nearest_promoter_id=NM_015668
+|nearest_promoter_id=NM_001286692
 |nearest_refseq=NM_015668
 |nearest_unigene=Hs.120021
-|num_trans=21
+|num_trans=10
 |species=human
 |start=100106157
 |start_of_center_position=66925514
 |strand=-
-|transcript_name=ENST00000360863.10 ENST00000617334.1 NM_001286692 NM_015668 uc003yjb.2 uc064ozd.1 BC092411
+|transcript_name=ENST00000520348.5 ENST00000521399.5 ENST00000521127.1 NR_002599 NR_152599 NR_152598 NR_152600 AK057116
 |tss_classification=yes
 |tss_id=hg_242897.1
 |tss_score=1
-|uniprot_id=A0A087WV61 Q8NE09
+|uniprot_id=
 }}