TSS: Hg 243305.1: Difference between revisions
From referenceTSS
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|SAP2= | |SAP2= | ||
|VFL1= | |VFL1= | ||
|all_trans= | |all_trans=ENST00000427650.2:-6 AK307323:-6 ENST00000357336.3:-23 NR_146419:-23 ENST00000615302.1:178 | ||
|chr=chr8 | |chr=chr8 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
|distance=- | |distance=-6 | ||
|distance_to_tss= | |distance_to_tss=1495 | ||
|end=85108733 | |end=85108733 | ||
|end_of_center_position=64369417 | |end_of_center_position=64369417 | ||
|entrez_id=85444 | |entrez_id=85444 | ||
|gc_percent=0.447761 | |gc_percent=0.447761 | ||
|gene_alias=CLERC | |gene_alias=CLERC{{!}}CLERK{{!}}SAP2{{!}}VFL1 | ||
|gene_description=leucine rich repeat and coiled-coil centrosomal protein 1 | |gene_description=leucine rich repeat and coiled-coil centrosomal protein 1 | ||
|gene_id= | |gene_id=728747 | ||
|gene_name= | |gene_name=ankyrin repeat domain 20 family member A4, pseudogene | ||
|gene_source=HGNC: | |gene_source=HGNC:31982 | ||
|gene_symbol= | |gene_symbol=ANKRD20A4P | ||
|gene_synonyms= | |gene_synonyms=OTTHUMG00000066855 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC: | |hgnc_mgi_id=HGNC:31982 | ||
|nearest_ensembl=ENSG00000133739 | |nearest_ensembl=ENSG00000133739 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_001349637 | ||
|nearest_refseq=NM_033402 | |nearest_refseq=NM_033402 | ||
|nearest_unigene=Hs.193115 | |nearest_unigene=Hs.193115 | ||
|num_trans= | |num_trans=5 | ||
|species=human | |species=human | ||
|start=85108732 | |start=85108732 | ||
|start_of_center_position=64369416 | |start_of_center_position=64369416 | ||
|strand=+ | |strand=+ | ||
|transcript_name= | |transcript_name=ENST00000427650.2 AK307323 | ||
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_243305.1 | |tss_id=hg_243305.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id= | |uniprot_id= | ||
}} | }} | ||
Revision as of 16:35, 17 June 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 1495 |
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| Nearest PromoterID: | NM_001349637 |
| Entrez ID: | 85444 |
| Nearest Unigene: | Hs.193115 |
| Nearest Refseq: | NM_033402 |
| Nearest Ensembl: | ENSG00000133739 |
| Gene Name: | ankyrin repeat domain 20 family member A4, pseudogene |
| Gene Alias: | CLERC|CLERK|SAP2|VFL1 |
| Gene Description: | leucine rich repeat and coiled-coil centrosomal protein 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.447761 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
TSS expression
Expression data not found.