TSS: Hg 40699.1: Difference between revisions
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{{TSSDetail | {{TSSDetail | ||
|SDHALP2= | |SDHALP2= | ||
|all_trans=ENST00000457233.5:0 ENST00000452844.5:0 ENST00000429897.5:0 ENST00000453324.5 | |all_trans=ENST00000457233.5:0 ENST00000452844.5:0 ENST00000429897.5:0 ENST00000453324.5:0 BC062438:0 AK057553:0 BC073879:0 ENST00000445430.5:1 BC064564:1 BC053551:-11 ENST00000425425.1:17 AK074764:17 ENST00000455183.1:20 NR_003265:-20 | ||
|chr=chr3 | |chr=chr3 | ||
|cpg_percent=0.145 | |cpg_percent=0.145 | ||
| Line 10: | Line 10: | ||
|entrez_id=727956 | |entrez_id=727956 | ||
|gc_percent=0.756219 | |gc_percent=0.756219 | ||
|gene_alias=SDHAL2 | |gene_alias=SDHAL2{{!}}SDHALP2 | ||
|gene_description=succinate dehydrogenase complex flavoprotein subunit A pseudogene 2 | |gene_description=succinate dehydrogenase complex flavoprotein subunit A pseudogene 2 | ||
|gene_id=727956 | |gene_id=727956 | ||
|gene_name= | |gene_name=MUC20 overlapping transcript; succinate dehydrogenase complex flavoprotein subunit A pseudogene 2 | ||
|gene_source=HGNC:27408 HGNC: | |gene_source=HGNC:27408 HGNC:53807 | ||
|gene_symbol= | |gene_symbol=MUC20-OT1 SDHAP2 | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type=pseudo | |gene_type=pseudo | ||
|hgnc_mgi_id=HGNC:27408 HGNC: | |hgnc_mgi_id=HGNC:27408 HGNC:53807 | ||
|nearest_ensembl=ENSG00000242086 | |nearest_ensembl=ENSG00000242086 | ||
|nearest_promoter_id=NR_003265 | |nearest_promoter_id=NR_003265 | ||
|nearest_refseq=NR_003265 | |nearest_refseq=NR_003265 | ||
|nearest_unigene=Hs.596261 | |nearest_unigene=Hs.596261 | ||
|num_trans= | |num_trans=14 | ||
|species=human | |species=human | ||
|start=195658058 | |start=195658058 | ||
|start_of_center_position=195658067 | |start_of_center_position=195658067 | ||
|strand=+ | |strand=+ | ||
|transcript_name=ENST00000457233.5 ENST00000452844.5 ENST00000429897.5 ENST00000453324.5 | |transcript_name=ENST00000457233.5 ENST00000452844.5 ENST00000429897.5 ENST00000453324.5 BC062438 AK057553 BC073879 | ||
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_40699.1 | |tss_id=hg_40699.1 | ||
Revision as of 23:16, 17 June 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 28 |
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| Nearest PromoterID: | NR_003265 |
| Entrez ID: | 727956 |
| Nearest Unigene: | Hs.596261 |
| Nearest Refseq: | NR_003265 |
| Nearest Ensembl: | ENSG00000242086 |
| Gene Name: | MUC20 overlapping transcript; succinate dehydrogenase complex flavoprotein subunit A pseudogene 2 |
| Gene Alias: | SDHAL2|SDHALP2 |
| Gene Description: | succinate dehydrogenase complex flavoprotein subunit A pseudogene 2 |
| Gene Type: | pseudo |
| CpG%: | 0.145 |
| GC%: | 0.756219 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
TSS expression
Expression data not found.