TSS: Hg 42286.1: Difference between revisions
From referenceTSS
No edit summary |
No edit summary |
||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|VACAMKL= | |VACAMKL= | ||
|all_trans=ENST00000475665.5:0 ENST00000296471.11:0 ENST00000488336.5:0 ENST00000463537.5:0 ENST00000487726.5:0 ENST00000467248.5:0 ENST00000466940.5:0 ENST00000466535.5:0 ENST00000480398.2:0 ENST00000479704.5:0 ENST00000498324.5:0 ENST00000476105.1:0 | |all_trans=ENST00000475665.5:0 ENST00000296471.11:0 ENST00000488336.5:0 ENST00000477224.6:0 ENST00000463537.5:0 ENST00000487726.5:0 ENST00000467248.5:0 ENST00000466940.5:0 ENST00000466535.5:0 ENST00000480398.2:0 ENST00000479704.5:0 ENST00000498324.5:0 ENST00000476105.1:0 NM_024046:0 NM_001320147:0 AL833943:0 BX647074:0 BC000497:0 BC001921:0 BC005828:0 BC017363:0 AL136697:0 AK074899:0 AK075294:0 AK074856:0 AK297437:0 AK297258:0 AK295588:0 AK299953:0 BC019256:5 AK315525:-14 LF208621:-29 MA444198:-29 | ||
|chr=chr3 | |chr=chr3 | ||
|cpg_percent=0.13 | |cpg_percent=0.13 | ||
|distance=0 | |distance=0 | ||
|distance_to_tss= | |distance_to_tss=-10 | ||
|end=49869941 | |end=49869941 | ||
|end_of_center_position=49869916 | |end_of_center_position=49869916 | ||
|entrez_id=79012 | |entrez_id=79012 | ||
|gc_percent=0.761194 | |gc_percent=0.761194 | ||
|gene_alias=1G5 | |gene_alias=1G5{{!}}VACAMKL | ||
|gene_description=CaM kinase like vesicle associated | |gene_description=CaM kinase like vesicle associated | ||
|gene_id=79012 | |gene_id=79012 | ||
|gene_name=CaM kinase | |gene_name=CaM kinase like vesicle associated | ||
|gene_source=HGNC:28788 | |gene_source=HGNC:28788 | ||
|gene_symbol=CAMKV | |gene_symbol=CAMKV | ||
| Line 20: | Line 20: | ||
|hgnc_mgi_id=HGNC:28788 | |hgnc_mgi_id=HGNC:28788 | ||
|nearest_ensembl=ENSG00000164076 | |nearest_ensembl=ENSG00000164076 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_024046 | ||
|nearest_refseq=NM_024046 | |nearest_refseq=NM_024046 | ||
|nearest_unigene=Hs.145156 | |nearest_unigene=Hs.145156 | ||
|num_trans= | |num_trans=33 | ||
|species=human | |species=human | ||
|start=49869890 | |start=49869890 | ||
|start_of_center_position=49869915 | |start_of_center_position=49869915 | ||
|strand=- | |strand=- | ||
|transcript_name=ENST00000475665.5 ENST00000296471.11 ENST00000488336.5 ENST00000463537.5 ENST00000487726.5 ENST00000467248.5 ENST00000466940.5 ENST00000466535.5 ENST00000480398.2 ENST00000479704.5 ENST00000498324.5 ENST00000476105.1 | |transcript_name=ENST00000475665.5 ENST00000296471.11 ENST00000488336.5 ENST00000477224.6 ENST00000463537.5 ENST00000487726.5 ENST00000467248.5 ENST00000466940.5 ENST00000466535.5 ENST00000480398.2 ENST00000479704.5 ENST00000498324.5 ENST00000476105.1 NM_024046 NM_001320147 AL833943 BX647074 BC000497 BC001921 BC005828 BC017363 AL136697 AK074899 AK075294 AK074856 AK297437 AK297258 AK295588 AK299953 | ||
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_42286.1 | |tss_id=hg_42286.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id=A0A024R331 B4DIG8 B4DM24 B4DMF2 B4DSW8 C9J9E2 C9JSB2 E7ETR1 F8WDJ4 Q8NCB2 | |uniprot_id=A0A024R331 A0A140VKD5 B4DIG8 B4DM24 B4DMF2 B4DSW8 C9J9E2 C9JSB2 E7ETR1 F8WDJ4 Q8NCB2 | ||
}} | }} | ||
Revision as of 23:53, 17 June 2021
Basic information about the TSS
|
| |||||||||||||
| TSS cluster detected* |
|---|
* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | -10 |
|---|---|
| Nearest PromoterID: | NM_024046 |
| Entrez ID: | 79012 |
| Nearest Unigene: | Hs.145156 |
| Nearest Refseq: | NM_024046 |
| Nearest Ensembl: | ENSG00000164076 |
| Gene Name: | CaM kinase like vesicle associated |
| Gene Alias: | 1G5|VACAMKL |
| Gene Description: | CaM kinase like vesicle associated |
| Gene Type: | protein-coding |
| CpG%: | 0.13 |
| GC%: | 0.761194 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
TSS expression
Expression data not found.