TSS: Hg 8085.1: Difference between revisions
From referenceTSS
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|IKKE= | |IKKE= | ||
|IKKI= | |IKKI= | ||
|all_trans=ENST00000605818.5:0 ENST00000578328.6:0 ENST00000584998.5:0 | |all_trans=ENST00000605818.5:0 ENST00000581977.7:0 ENST00000578328.6:0 ENST00000584998.5:0 NM_014002:0 NM_001193321:0 NM_001193322:0 AK310737:0 AK093798:0 AY660028:0 BC105924:0 BC105923:0 BC107591:0 BC107812:0 D63485:0 LF213696:-20 MA449273:-20 LF319444:-82 MA555021:-82 ENST00000579827.6:135 | ||
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.025 | |cpg_percent=0.025 | ||
|distance=0 | |distance=0 | ||
|distance_to_tss= | |distance_to_tss=9 | ||
|end=206470507 | |end=206470507 | ||
|end_of_center_position=206470486 | |end_of_center_position=206470486 | ||
|entrez_id=9641 | |entrez_id=9641 | ||
|gc_percent=0.58209 | |gc_percent=0.58209 | ||
|gene_alias=IKK-E | |gene_alias=IKK-E{{!}}IKK-i{{!}}IKKE{{!}}IKKI | ||
|gene_description= | |gene_description=inhibitor of nuclear factor kappa B kinase subunit epsilon | ||
|gene_id=9641 | |gene_id=9641 | ||
|gene_name= | |gene_name=inhibitor of nuclear factor kappa B kinase subunit epsilon | ||
|gene_source=HGNC:14552 | |gene_source=HGNC:14552 | ||
|gene_symbol=IKBKE | |gene_symbol=IKBKE | ||
| Line 25: | Line 25: | ||
|nearest_refseq=NM_014002 | |nearest_refseq=NM_014002 | ||
|nearest_unigene=Hs.321045 | |nearest_unigene=Hs.321045 | ||
|num_trans= | |num_trans=20 | ||
|species=human | |species=human | ||
|start=206470463 | |start=206470463 | ||
|start_of_center_position=206470485 | |start_of_center_position=206470485 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box=-81(GTCTCTTTAAGA,-,0.00),-78(TCTTTAAGAGAG,+,0.00) | ||
|transcript_name=ENST00000605818.5 ENST00000578328.6 ENST00000584998.5 | |transcript_name=ENST00000605818.5 ENST00000581977.7 ENST00000578328.6 ENST00000584998.5 NM_014002 NM_001193321 NM_001193322 AK310737 AK093798 AY660028 BC105924 BC105923 BC107591 BC107812 D63485 | ||
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_8085.1 | |tss_id=hg_8085.1 | ||
Revision as of 14:51, 18 June 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 9 |
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| Nearest PromoterID: | NM_001193322 |
| Entrez ID: | 9641 |
| Nearest Unigene: | Hs.321045 |
| Nearest Refseq: | NM_014002 |
| Nearest Ensembl: | ENSG00000263528 |
| Gene Name: | inhibitor of nuclear factor kappa B kinase subunit epsilon |
| Gene Alias: | IKK-E|IKK-i|IKKE|IKKI |
| Gene Description: | inhibitor of nuclear factor kappa B kinase subunit epsilon |
| Gene Type: | protein-coding |
| CpG%: | 0.025 |
| GC%: | 0.58209 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -81(GTCTCTTTAAGA,-,0.00),-78(TCTTTAAGAGAG,+,0.00) |
TSS expression
Expression data not found.