TSS: Hg 86267.1: Difference between revisions

Revision as of 16:57, 18 June 2021

Basic information about the TSS

TSS ID:	hg_86267.1
Species:	human
Chr:	chr7

Start:	131327707
End:	131327800
Strand:	-

TSS cluster detected^*

* The number of TSS cluster called studies (maximum 16)

Gene and protein annotation

Transcript_name:	ENST00000648242.1 ENST00000429067.5 ENST00000659539.1 ENST00000653823.1 ENST00000656518.1 ENST00000656389.1 ENST00000670684.1 ENST00000653124.1 ENST00000454515.6 ENST00000444245.6 ENST00000663485.1 ENST00000669897.1 ENST00000416220.6 NR_125364 AK054623
Distance:	0
GeneID:	100506881
HGNC/MGI_ID:	HGNC:40374
UniProt_ID:

Gene_name:	MKLN1 antisense RNA
Gene_symbol:	MKLN1-AS
Gene_synonyms:
Gene_source:	HGNC:40374

TATA-Box annotation

Distance to TSS:	25
Nearest PromoterID:	NR_125364
Entrez ID:	100506881
Nearest Unigene:	Hs.660830
Nearest Refseq:	NR_125364
Nearest Ensembl:	ENSG00000236753
Gene Name:	MKLN1 antisense RNA
Gene Alias:	MKLN1-AS2
Gene Description:	MKLN1 antisense RNA
Gene Type:	ncRNA
CpG%:	0.095
GC%:	0.701493
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):	-77(TGCTCTTAAAGG,-,0.00),-76(GCTCTTAAAGGG,+,0.00),-76(GCTCTTAAAGGG,-,0.00),-74(TCTTAAAGGGGC,+,0.00)

TSS expression

Expression data not found.

@@ Line 1: / Line 1: @@
 {{TSSDetail
-|all_trans=ENST00000429067.5:0 ENST00000444245.5:0 ENST00000416220.5:0 ENST00000454515.5:0 NR_125364:0 uc003vqr.1:0 uc064ibw.1:0 uc064iby.1:0 uc064ibz.1:0 AK054623:0 ENST00000447904.5:388 uc064ibx.1:388 ENST00000447514.1:-422 uc064ica.1:-422
+|all_trans=ENST00000648242.1:0 ENST00000429067.5:0 ENST00000659539.1:0 ENST00000653823.1:0 ENST00000656518.1:0 ENST00000656389.1:0 ENST00000670684.1:0 ENST00000653124.1:0 ENST00000454515.6:0 ENST00000444245.6:0 ENST00000663485.1:0 ENST00000669897.1:0 ENST00000416220.6:0 NR_125364:0 AK054623:0 ENST00000447514.1:-422 ENST00000655177.1:-454
 |chr=chr7
 |cpg_percent=0.095
@@ Line 22: / Line 22: @@
 |nearest_refseq=NR_125364
 |nearest_unigene=Hs.660830
-|num_trans=14
+|num_trans=17
 |species=human
 |start=131327707
 |start_of_center_position=131327753
 |strand=-
-|tata_box="-77(TGCTCTTAAAGG,-,0.00),-76(GCTCTTAAAGGG,+,0.00),-76(GCTCTTAAAGGG,-,0.00),-74(TCTTAAAGGGGC,+,0.00)"
+|tata_box=-77(TGCTCTTAAAGG,-,0.00),-76(GCTCTTAAAGGG,+,0.00),-76(GCTCTTAAAGGG,-,0.00),-74(TCTTAAAGGGGC,+,0.00)
-|transcript_name=ENST00000429067.5 ENST00000444245.5 ENST00000416220.5 ENST00000454515.5 NR_125364 uc003vqr.1 uc064ibw.1 uc064iby.1 uc064ibz.1 AK054623
+|transcript_name=ENST00000648242.1 ENST00000429067.5 ENST00000659539.1 ENST00000653823.1 ENST00000656518.1 ENST00000656389.1 ENST00000670684.1 ENST00000653124.1 ENST00000454515.6 ENST00000444245.6 ENST00000663485.1 ENST00000669897.1 ENST00000416220.6 NR_125364 AK054623
 |tss_classification=yes
 |tss_id=hg_86267.1