TSS: Mm 103585.1: Difference between revisions

Revision as of 17:30, 19 June 2021

Basic information about the TSS

TSS cluster detected^*

* The number of TSS cluster called studies (maximum 5)

Gene and protein annotation

TATA-Box annotation

Distance to TSS:	21
Nearest PromoterID:	NM_207523
Entrez ID:	268449
Nearest Unigene:	Mm.22723
Nearest Refseq:	NM_207523
Nearest Ensembl:	ENSMUSG00000058546
Gene Name:	ribosomal protein L23A
Gene Alias:	BC029892\|MDA20
Gene Description:	ribosomal protein L23A
Gene Type:	protein-coding
CpG%:	0.045
GC%:	0.477612
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):	-65(CTATATATAAGC,-,0.00)

TSS expression

Expression data not found.

@@ Line 1: / Line 1: @@
 {{TSSDetail
 |MDA20=
-|all_trans=BC086884:0 BC086883:0 AK028387:0 AK152095:0 BC125640:0 BC125642:0 BC029892:9 AF452721:9 ENSMUST00000102483.4:-10 NM_207523:-10 uc007kil.3:-10 BC096637:10 BC026656:11 ENSMUST00000127270.1:475
+|all_trans=BC086884:0 BC086883:0 AK028387:0 AK152095:0 BC125640:0 BC125642:0 BC029892:9 AF452721:9 ENSMUST00000102483.4:-10 NM_207523:-10 BC096637:10 LF198696:-11 MA434273:-11 BC026656:11 ENSMUST00000127270.1:475 LF229076:498 MA464653:498
 |chr=chr11
 |cpg_percent=0.045
@@ Line 10: / Line 10: @@
 |entrez_id=268449
 |gc_percent=0.477612
-|gene_alias=BC029892
+|gene_alias=BC029892{{!}}MDA20
 |gene_description=ribosomal protein L23A
 |gene_id=268449
@@ Line 23: / Line 23: @@
 |nearest_refseq=NM_207523
 |nearest_unigene=Mm.22723
-|num_trans=14
+|num_trans=17
 |species=mouse
 |start=78183551
 |start_of_center_position=78183562
 |strand=-
-|tata_box="-65(CTATATATAAGC,-,0.00)"
+|tata_box=-65(CTATATATAAGC,-,0.00)
 |transcript_name=BC086884 BC086883 AK028387 AK152095 BC125640 BC125642
 |tss_classification=yes