TSS: Mm 115885.1: Difference between revisions
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|all_trans=ENSMUST00000102979.1:0 NM_175657: | |all_trans=ENSMUST00000102979.1:0 NM_175657:0 | ||
|chr=chr13 | |chr=chr13 | ||
|cpg_percent=0.055 | |cpg_percent=0.055 | ||
|distance=0 | |distance=0 | ||
|distance_to_tss= | |distance_to_tss=1 | ||
|end=21832198 | |end=21832198 | ||
|end_of_center_position=21832197 | |end_of_center_position=21832197 | ||
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|gc_percent=0.577114 | |gc_percent=0.577114 | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description= | |gene_description=histone cluster 1, H4n | ||
|gene_id= | |gene_id=319161 | ||
|gene_name= | |gene_name=H4 clustered histone 18 | ||
|gene_source=MGI:4843992 | |gene_source=MGI:4843992 | ||
|gene_symbol= | |gene_symbol=H4c18 | ||
|gene_synonyms= | |gene_synonyms=Hist1h4n | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=MGI:4843992 | |hgnc_mgi_id=MGI:4843992 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_175657 | |nearest_refseq=NM_175657 | ||
|nearest_unigene=Mm.261664 | |nearest_unigene=Mm.261664 | ||
|num_trans= | |num_trans=2 | ||
|species=mouse | |species=mouse | ||
|start=21832194 | |start=21832194 | ||
|start_of_center_position=21832196 | |start_of_center_position=21832196 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box=-35(CCCTATAAGAGG,-,0.00) | ||
|transcript_name=ENSMUST00000102979.1 | |transcript_name=ENSMUST00000102979.1 NM_175657 | ||
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_115885.1 | |tss_id=mm_115885.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id=B2RTM0 | |uniprot_id=B2RTM0 P62806 | ||
}} | }} | ||
Revision as of 22:18, 19 June 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 5)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 1 |
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| Nearest PromoterID: | NM_175657 |
| Entrez ID: | 319161 |
| Nearest Unigene: | Mm.261664 |
| Nearest Refseq: | NM_175657 |
| Nearest Ensembl: | ENSMUSG00000069305 |
| Gene Name: | H4 clustered histone 18 |
| Gene Alias: | - |
| Gene Description: | histone cluster 1, H4n |
| Gene Type: | protein-coding |
| CpG%: | 0.055 |
| GC%: | 0.577114 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -35(CCCTATAAGAGG,-,0.00) |
TSS expression
Expression data not found.