TSS: Mm 139083.1: Difference between revisions
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|D130055I09Rik= | |D130055I09Rik= | ||
|all_trans=ENSMUST00000002840.8:0 ENSMUST00000144964.7:0 ENSMUST00000127897.1:0 NM_145488:0 | |all_trans=ENSMUST00000002840.8:0 ENSMUST00000144964.7:0 ENSMUST00000127897.1:0 NM_145488:0 NR_157369:0 BC003424:0 AK083898:0 AK143173:0 AK030565:0 AK220525:0 AK192143:430 | ||
|chr=chr17 | |chr=chr17 | ||
|cpg_percent=0.09 | |cpg_percent=0.09 | ||
|distance=0 | |distance=0 | ||
|distance_to_tss= | |distance_to_tss=2 | ||
|end=46711497 | |end=46711497 | ||
|end_of_center_position=46711479 | |end_of_center_position=46711479 | ||
|entrez_id=224824 | |entrez_id=224824 | ||
|gc_percent=0.651741 | |gc_percent=0.651741 | ||
|gene_alias=AI132582 | |gene_alias=AI132582{{!}}D130055I09Rik{{!}}PAF-2 | ||
|gene_description=peroxisomal biogenesis factor 6 | |gene_description=peroxisomal biogenesis factor 6 | ||
|gene_id=224824 | |gene_id=224824 | ||
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|mKIAA4177= | |mKIAA4177= | ||
|nearest_ensembl=ENSMUSG00000002763 | |nearest_ensembl=ENSMUSG00000002763 | ||
|nearest_promoter_id= | |nearest_promoter_id=NR_157369 | ||
|nearest_refseq=NM_145488 | |nearest_refseq=NM_145488 | ||
|nearest_unigene=Mm.299399 | |nearest_unigene=Mm.299399 | ||
|num_trans= | |num_trans=11 | ||
|species=mouse | |species=mouse | ||
|start=46711459 | |start=46711459 | ||
|start_of_center_position=46711478 | |start_of_center_position=46711478 | ||
|strand=+ | |strand=+ | ||
|transcript_name=ENSMUST00000002840.8 ENSMUST00000144964.7 ENSMUST00000127897.1 NM_145488 | |transcript_name=ENSMUST00000002840.8 ENSMUST00000144964.7 ENSMUST00000127897.1 NM_145488 NR_157369 BC003424 AK083898 AK143173 AK030565 AK220525 | ||
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_139083.1 | |tss_id=mm_139083.1 | ||
Revision as of 07:22, 20 June 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 5)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 2 |
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| Nearest PromoterID: | NR_157369 |
| Entrez ID: | 224824 |
| Nearest Unigene: | Mm.299399 |
| Nearest Refseq: | NM_145488 |
| Nearest Ensembl: | ENSMUSG00000002763 |
| Gene Name: | peroxisomal biogenesis factor 6 |
| Gene Alias: | AI132582|D130055I09Rik|PAF-2 |
| Gene Description: | peroxisomal biogenesis factor 6 |
| Gene Type: | protein-coding |
| CpG%: | 0.09 |
| GC%: | 0.651741 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
TSS expression
Expression data not found.