TSS: Mm 28547.1: Difference between revisions
From referenceTSS
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|AA589624= | |AA589624= | ||
|Nice-1= | |Nice-1= | ||
|all_trans=ENSMUST00000029521.4:0 NM_028798 | |all_trans=ENSMUST00000029521.4:0 NM_028798:0 AK009010:0 ENSMUST00000107301.1:11 BC060280:15 | ||
|chr=chr3 | |chr=chr3 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
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|entrez_id=74175 | |entrez_id=74175 | ||
|gc_percent=0.492537 | |gc_percent=0.492537 | ||
|gene_alias=2300002G24Rik | |gene_alias=2300002G24Rik{{!}}AA589624{{!}}Nice-1 | ||
|gene_description=cysteine-rich C-terminal 1 | |gene_description=cysteine-rich C-terminal 1 | ||
|gene_id=74175 | |gene_id=74175 | ||
| Line 24: | Line 24: | ||
|nearest_refseq=NM_028798 | |nearest_refseq=NM_028798 | ||
|nearest_unigene=Mm.35806 | |nearest_unigene=Mm.35806 | ||
|num_trans= | |num_trans=5 | ||
|species=mouse | |species=mouse | ||
|start=93015679 | |start=93015679 | ||
|start_of_center_position=93015686 | |start_of_center_position=93015686 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box=-32(TCTTATAAAAGC,+,0.00),-32(TCTTATAAAAGC,-,0.00) | ||
|transcript_name=ENSMUST00000029521.4 NM_028798 | |transcript_name=ENSMUST00000029521.4 NM_028798 AK009010 | ||
|tss_classification=no | |tss_classification=no | ||
|tss_id=mm_28547.1 | |tss_id=mm_28547.1 | ||
Revision as of 00:50, 21 June 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 5)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -1 |
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| Nearest PromoterID: | NM_028798 |
| Entrez ID: | 74175 |
| Nearest Unigene: | Mm.35806 |
| Nearest Refseq: | NM_028798 |
| Nearest Ensembl: | ENSMUSG00000027913 |
| Gene Name: | cysteine-rich C-terminal 1 |
| Gene Alias: | 2300002G24Rik|AA589624|Nice-1 |
| Gene Description: | cysteine-rich C-terminal 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.492537 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -32(TCTTATAAAAGC,+,0.00),-32(TCTTATAAAAGC,-,0.00) |
TSS expression
Expression data not found.