TSS: Mm 33971.1: Difference between revisions
From referenceTSS
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|cpg_percent=0 | |cpg_percent=0 | ||
|distance=447 | |distance=447 | ||
|distance_to_tss= | |distance_to_tss=20369 | ||
|end=137614543 | |end=137614543 | ||
|end_of_center_position=137614542 | |end_of_center_position=137614542 | ||
|entrez_id=170707 | |entrez_id=170707 | ||
|gc_percent=0.462687 | |gc_percent=0.462687 | ||
|gene_alias=2810449C13Rik | |gene_alias=2810449C13Rik{{!}}AI115503{{!}}BC021769{{!}}D330022K21Rik{{!}}Usp31 | ||
|gene_description=ubiquitin specific peptidase 48 | |gene_description=ubiquitin specific peptidase 48 | ||
|gene_id=654493 | |gene_id=654493 | ||
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|hgnc_mgi_id=MGI:3611235 | |hgnc_mgi_id=MGI:3611235 | ||
|nearest_ensembl=ENSMUSG00000043411 | |nearest_ensembl=ENSMUSG00000043411 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_001347227 | ||
|nearest_refseq=NM_130879 | |nearest_refseq=NM_130879 | ||
|nearest_unigene=Mm.218478 | |nearest_unigene=Mm.218478 | ||
| Line 31: | Line 31: | ||
|start_of_center_position=137614541 | |start_of_center_position=137614541 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box=33(GTCTTTTTAAAG,-,0.00),35(CTTTTTAAAGAT,+,0.00) | ||
|transcript_name=AK136342 | |transcript_name=AK136342 | ||
|tss_classification=no | |tss_classification=no | ||
Revision as of 02:56, 21 June 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 5)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 20369 |
|---|---|
| Nearest PromoterID: | NM_001347227 |
| Entrez ID: | 170707 |
| Nearest Unigene: | Mm.218478 |
| Nearest Refseq: | NM_130879 |
| Nearest Ensembl: | ENSMUSG00000043411 |
| Gene Name: | Riken cDNA 8030494B02 gene |
| Gene Alias: | 2810449C13Rik|AI115503|BC021769|D330022K21Rik|Usp31 |
| Gene Description: | ubiquitin specific peptidase 48 |
| Gene Type: | protein-coding |
| CpG%: | 0 |
| GC%: | 0.462687 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 33(GTCTTTTTAAAG,-,0.00),35(CTTTTTAAAGAT,+,0.00) |
TSS expression
Expression data not found.