TSS: Mm 77118.1: Difference between revisions
From referenceTSS
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|MG160= | |MG160= | ||
|Selel= | |Selel= | ||
|all_trans=LF303440:320 MA539017:320 | |||
|chr=chr8 | |chr=chr8 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
|distance= | |distance=320 | ||
|distance_to_tss= | |distance_to_tss=1072 | ||
|end=111258141 | |end=111258141 | ||
|end_of_center_position=111258139 | |end_of_center_position=111258139 | ||
|entrez_id=20340 | |entrez_id=20340 | ||
|gc_percent=0.348259 | |gc_percent=0.348259 | ||
|gene_alias=AI593353 | |gene_alias=AI593353{{!}}AW537898{{!}}CFR{{!}}CFR-1{{!}}ESL-1{{!}}MG-160{{!}}MG160{{!}}Selel | ||
|gene_description=golgi apparatus protein 1 | |gene_description=golgi apparatus protein 1 | ||
|gene_name=Glg1 | |gene_name=Glg1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl=ENSMUSG00000003316 | |nearest_ensembl=ENSMUSG00000003316 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_001368315 | ||
|nearest_refseq=NM_009149 | |nearest_refseq=NM_009149 | ||
|nearest_unigene=Mm.276271 | |nearest_unigene=Mm.276271 | ||
|num_trans= | |num_trans=2 | ||
|species=mouse | |species=mouse | ||
|start=111258135 | |start=111258135 | ||
|start_of_center_position=111258138 | |start_of_center_position=111258138 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box=68(CCCTATAAAGTC,+,0.00) | ||
|transcript_name= | |transcript_name=LF303440 MA539017 | ||
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_77118.1 | |tss_id=mm_77118.1 | ||
|tss_score=1 | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 19:29, 21 June 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 5)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 1072 |
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| Nearest PromoterID: | NM_001368315 |
| Entrez ID: | 20340 |
| Nearest Unigene: | Mm.276271 |
| Nearest Refseq: | NM_009149 |
| Nearest Ensembl: | ENSMUSG00000003316 |
| Gene Name: | Glg1 |
| Gene Alias: | AI593353|AW537898|CFR|CFR-1|ESL-1|MG-160|MG160|Selel |
| Gene Description: | golgi apparatus protein 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.348259 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 68(CCCTATAAAGTC,+,0.00) |