TSS: Mm 79132.1: Difference between revisions
From referenceTSS
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|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
|distance= | |distance=NA | ||
|distance_to_tss=20027 | |distance_to_tss=20027 | ||
|end=47550385 | |end=47550385 | ||
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|entrez_id=54725 | |entrez_id=54725 | ||
|gc_percent=0.412935 | |gc_percent=0.412935 | ||
|gene_alias=2900073G06Rik | |gene_alias=2900073G06Rik{{!}}3100001I08Rik{{!}}AI987920{{!}}Bl2{{!}}Igsf4{{!}}Igsf4a{{!}}Necl2{{!}}RA175{{!}}RA175A{{!}}RA175B{{!}}RA175C{{!}}RA175N{{!}}ST17{{!}}SgIGSF{{!}}SynCam{{!}}Tslc1 | ||
|gene_description=cell adhesion molecule 1 | |gene_description=cell adhesion molecule 1 | ||
|gene_name=Cadm1 | |gene_name=Cadm1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl=ENSMUSG00000032076 | |nearest_ensembl=ENSMUSG00000032076 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_001025600 | ||
|nearest_refseq=NM_018770 | |nearest_refseq=NM_018770 | ||
|nearest_unigene=Mm.234832 | |nearest_unigene=Mm.234832 | ||
| Line 36: | Line 36: | ||
|start_of_center_position=47550378 | |start_of_center_position=47550378 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box=-8(TTTTTTATGGTG,+,0.00) | ||
|transcript_name= | |transcript_name= | ||
|tss_classification=no | |tss_classification=no | ||
Latest revision as of 20:14, 21 June 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 5)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 20027 |
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| Nearest PromoterID: | NM_001025600 |
| Entrez ID: | 54725 |
| Nearest Unigene: | Mm.234832 |
| Nearest Refseq: | NM_018770 |
| Nearest Ensembl: | ENSMUSG00000032076 |
| Gene Name: | Cadm1 |
| Gene Alias: | 2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1 |
| Gene Description: | cell adhesion molecule 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.412935 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -8(TTTTTTATGGTG,+,0.00) |