TSS: Hg 132405.1: Difference between revisions

From referenceTSS
Jump to: navigation, search
No edit summary
No edit summary
 
Line 8: Line 8:
|POC3=
|POC3=
|SLSN6=
|SLSN6=
|all_trans=ENST00000552810.6:0 ENST00000674971.1:0 ENST00000672414.2:0 ENST00000673058.2:0 ENST00000675833.1:0 ENST00000675476.1:0 ENST00000309041.12:0 ENST00000675794.1:0 ENST00000676074.1:0 ENST00000675408.1:0 ENST00000675230.1:0 ENST00000675628.1:0 ENST00000676448.1:0 ENST00000547926.7:0 ENST00000671822.2:0 ENST00000676351.1:0 ENST00000397838.8:0 ENST00000675559.1:0 ENST00000676418.1:0 ENST00000676331.1:0 ENST00000552770.3:0 NM_025114:0 LF208879:0 MA444456:0 LF323664:91 MA559241:91 BC043398:96 DQ109808:-117 AK023677:-117 ENST00000675361.1:218 ENST00000550962.6:279
|all_trans=HGNC:29021
|chr=chr12
|chr=chr12
|cpg_percent=0.08
|cpg_percent=0.08
Line 30: Line 30:
|nearest_refseq=NM_025114
|nearest_refseq=NM_025114
|nearest_unigene=Hs.150444
|nearest_unigene=Hs.150444
|num_trans=31
|num_trans=80184
|rd16=
|rd16=
|species=human
|species=human
Line 36: Line 36:
|start_of_center_position=88142082
|start_of_center_position=88142082
|strand=-
|strand=-
|transcript_name=ENST00000552810.6 ENST00000674971.1 ENST00000672414.2 ENST00000673058.2 ENST00000675833.1 ENST00000675476.1 ENST00000309041.12 ENST00000675794.1 ENST00000676074.1 ENST00000675408.1 ENST00000675230.1 ENST00000675628.1 ENST00000676448.1 ENST00000547926.7 ENST00000671822.2 ENST00000676351.1 ENST00000397838.8 ENST00000675559.1 ENST00000676418.1 ENST00000676331.1 ENST00000552770.3 NM_025114 LF208879 MA444456
|transcript_name=ENST00000552810.6 ENST00000674971.1 ENST00000672414.2 ENST00000673058.2 ENST00000675833.1 ENST00000675476.1 ENST00000309041.12 ENST00000675794.1 ENST00000676074.1 ENST00000675408.1 ENST00000675230.1 ENST00000675628.1 ENST00000676448.1 ENST00000547926.7 ENST00000671822.2 ENST00000676351.1 ENST00000397838.8 ENST00000675559.1 ENST00000676418.1 ENST00000676331.1 ENST00000552770.3
|tss_classification=yes
|tss_classification=yes
|tss_id=hg_132405.1
|tss_id=hg_132405.1

Latest revision as of 05:18, 20 July 2021

Basic information about the TSS

TSS ID:hg_132405.1
Species:human
Chr:chr12
Start:88142065
End:88142099
Strand:-
TSS cluster detected*

  * The number of TSS cluster called studies (maximum 16)



Gene and protein annotation

Transcript_name:ENST00000552810.6 ENST00000674971.1 ENST00000672414.2 ENST00000673058.2 ENST00000675833.1 ENST00000675476.1 ENST00000309041.12 ENST00000675794.1 ENST00000676074.1 ENST00000675408.1 ENST00000675230.1 ENST00000675628.1 ENST00000676448.1 ENST00000547926.7 ENST00000671822.2 ENST00000676351.1 ENST00000397838.8 ENST00000675559.1 ENST00000676418.1 ENST00000676331.1 ENST00000552770.3
Distance:0
GeneID:80184
HGNC/MGI_ID:HGNC:29021
UniProt_ID:A0A0A0MS86 A0A5F9ZHU6 A0A5F9ZHV7 F8VS29 F8W0V9 J3KNF5 O15078 Q05BJ6
Gene_name:centrosomal protein 290
Gene_symbol:CEP290
Gene_synonyms:3H11Ag BBS14 CT87 FLJ13615 JBTS5 KIAA0373 LCA10 MKS4 NPHP6 POC3 SLSN6 rd16
Gene_source:HGNC:29021



TATA-Box annotation

Distance to TSS:134
Nearest PromoterID:NM_025114
Entrez ID:80184
Nearest Unigene:Hs.150444
Nearest Refseq:NM_025114
Nearest Ensembl:ENSG00000198707
Gene Name:centrosomal protein 290
Gene Alias:3H11Ag|BBS14|CT87|JBTS5|LCA10|MKS4|NPHP6|POC3|SLSN6|rd16
Gene Description:centrosomal protein 290
Gene Type:protein-coding
CpG%:0.08
GC%:0.60199
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):



TSS expression

Expression data not found.

Retrieved from "https://reftss.riken.jp/reftss/index.php?title=TSS:Hg_132405.1&oldid=1519119"