TSS: Hg 86267.1: Difference between revisions
From referenceTSS
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|all_trans= | |all_trans=HGNC:40374 | ||
|chr=chr7 | |chr=chr7 | ||
|cpg_percent=0.095 | |cpg_percent=0.095 | ||
Line 22: | Line 22: | ||
|nearest_refseq=NR_125364 | |nearest_refseq=NR_125364 | ||
|nearest_unigene=Hs.660830 | |nearest_unigene=Hs.660830 | ||
|num_trans= | |num_trans=100506881 | ||
|species=human | |species=human | ||
|start=131327707 | |start=131327707 | ||
Line 28: | Line 28: | ||
|strand=- | |strand=- | ||
|tata_box=-77(TGCTCTTAAAGG,-,0.00),-76(GCTCTTAAAGGG,+,0.00),-76(GCTCTTAAAGGG,-,0.00),-74(TCTTAAAGGGGC,+,0.00) | |tata_box=-77(TGCTCTTAAAGG,-,0.00),-76(GCTCTTAAAGGG,+,0.00),-76(GCTCTTAAAGGG,-,0.00),-74(TCTTAAAGGGGC,+,0.00) | ||
|transcript_name=ENST00000648242.1 ENST00000429067.5 ENST00000659539.1 ENST00000653823.1 ENST00000656518.1 ENST00000656389.1 ENST00000670684.1 ENST00000653124.1 ENST00000454515.6 ENST00000444245.6 ENST00000663485.1 ENST00000669897.1 ENST00000416220.6 | |transcript_name=ENST00000648242.1 ENST00000429067.5 ENST00000659539.1 ENST00000653823.1 ENST00000656518.1 ENST00000656389.1 ENST00000670684.1 ENST00000653124.1 ENST00000454515.6 ENST00000444245.6 ENST00000663485.1 ENST00000669897.1 ENST00000416220.6 AK054623 | ||
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_86267.1 | |tss_id=hg_86267.1 |
Latest revision as of 13:44, 22 July 2021
Basic information about the TSS
|
| |||||||||||||
TSS cluster detected* |
---|
* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
|
|
TATA-Box annotation
Distance to TSS: | 25 |
---|---|
Nearest PromoterID: | NR_125364 |
Entrez ID: | 100506881 |
Nearest Unigene: | Hs.660830 |
Nearest Refseq: | NR_125364 |
Nearest Ensembl: | ENSG00000236753 |
Gene Name: | MKLN1 antisense RNA |
Gene Alias: | MKLN1-AS2 |
Gene Description: | MKLN1 antisense RNA |
Gene Type: | ncRNA |
CpG%: | 0.095 |
GC%: | 0.701493 |
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -77(TGCTCTTAAAGG,-,0.00),-76(GCTCTTAAAGGG,+,0.00),-76(GCTCTTAAAGGG,-,0.00),-74(TCTTAAAGGGGC,+,0.00) |
TSS expression
Expression data not found.