Template: Test area: Difference between revisions
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{{Loading|loadingimage=sprites.gif}}<noinclude>[[Category:Sample pages]]</noinclude> | |||
<html><style> | |||
table { | |||
border-collapse:collapse; | |||
} | |||
.inner tr{ | |||
border-bottom-style: dotted; | |||
border-bottom-width: thin; | |||
} | |||
.section_head{ | |||
font-weight: bold; | |||
font-size: 16px; | |||
font-style:; | |||
} | |||
.item_label { | |||
text-align:left; | |||
width:60px; | |||
} | |||
.item_label_long { | |||
text-align:left; | |||
width:200px; | |||
word-wrap:break-word; | |||
} | |||
.ttb { | |||
width:400px; | |||
word-wrap:break-word; | |||
} | |||
</style></html> | |||
<span class="section_head">Basic information about the TSS</span> | |||
<hr width="370px" size="2" style="text-align:left;margin-left:0" noshade> | |||
<table width="370px"><tr><td> | |||
<div style="width:42%; float:left;"> | |||
<table class="inner" > | |||
<tr><th scope="row" class="item_label">TSS ID:</th><td>[[tss_id::{{{tss_id}}}]]</td></tr> | |||
<tr><th scope="row" class="item_label">Species:</th><td>{{{species}}}</td></tr> | |||
<tr><th scope="row" class="item_label">Chr:</th><td>{{{chr}}}</td></tr> | |||
<tr><th scope="row" class="item_label">TSS Classification:</th><td>{{{tss_classification}}}</td></tr> | |||
</table> | |||
</div> | |||
<div style="width:42%; float:right;margin-left:40px"> | |||
<table class="inner" > | |||
<tr><th scope="row" class="item_label">Start:</th><td>{{{start}}}</td></tr> | |||
<tr><th scope="row" class="item_label">End:</th><td>{{{end}}}</td></tr> | |||
<tr><th scope="row" class="item_label">Strand:</th><td>{{{strand}}}</td></tr> | |||
<tr><th scope="row" class="item_label">TSS Score:</th><td>{{{strand}}}</td></tr> | |||
</table> | |||
</div></td></tr> | |||
</table> | |||
<br/> | |||
<br/> | |||
<span class="section_head">Gene and protein annotation</span> | |||
<hr width="270px" size="2" style="text-align:left;margin-left:0" noshade> | |||
<table border="0" ><tr><td> | |||
<div style="width:42%; float:left;"> | |||
<table class="inner" > | |||
<tr><th scope="row" align="left">Transcript_name:</th><td>{{{transcript_name}}}</td></tr> | |||
<tr><th scope="row" align="left">Distance:</th><td>{{{distance}}}</td></tr> | |||
<tr><th scope="row" align="left">GeneID:</th><td>{{{gene_id}}}</td></tr> | |||
<tr><th scope="row" align="left">HGNC/MGI_ID:</th><td>{{{hgnc_mgi_id}}}</td></tr> | |||
<tr><th scope="row" align="left">UniProt_ID:</th><td>{{{uniprot_id}}}</td></tr> | |||
</table></div> | |||
<div style="width:42%; float:right;"> | |||
<table class="inner" > | |||
<tr><th scope="row" align="left">Gene_name:</th><td>{{{gene_name}}}</td></tr> | |||
<tr><th scope="row" align="left">Gene_symbol:</th><td>{{{gene_symbol}}}</td></tr> | |||
<tr><th scope="row" align="left">Gene_synonyms:</th><td>{{{gene_synonyms}}}</td></tr> | |||
<tr><th scope="row" align="left">Gene_source:</th><td>{{{gene_source}}}</td></tr> | |||
</table> | |||
</div></td></tr> | |||
</table> | |||
<br/> | |||
<br/> | |||
<span class="section_head">Transcript annotation</span> | |||
<hr width="200px" size="2" style="text-align:left;margin-left:0" noshade> | |||
<table class="inner" border="0" > | |||
<tr><th scope="row" align="left">Transcript_name:</th><td>{{{transcript_name}}}</td></tr> | |||
<tr><th scope="row" align="left">Distance:</th><td>{{{distance}}}</td></tr> | |||
<tr><th scope="row" align="left">Num_trans:</th><td>{{{num_trans}}}</td></tr> | |||
<tr><th scope="row" align="left">All_trans:</th><td>:{{{all_trans}}}</td></tr> | |||
</table> | |||
<br/> | |||
<br/> | |||
<span class="section_head">TATA-Box annotation</span> | |||
<hr width="200px" size="2" style="text-align:left;margin-left:0" noshade> | |||
<table class="inner" style="width: 600px;table-layout:fixed;"> | |||
<tr><th scope="row" class="item_label_long">Distance to TSS:</th><td class="ttb">{{{distance_to_tss}}}</td></tr> | |||
<tr><th scope="row" class="item_label_long">Nearest PromoterID:</th><td class="ttb">{{{nearest_promoter_id}}}</td></tr> | |||
<tr><th scope="row" class="item_label_long">Entrez ID:</th><td class="ttb">{{{entrez_id}}}</td></tr> | |||
<tr><th scope="row" class="item_label_long">Nearest Unigene:</th><td class="ttb">{{{nearest_unigene}}}</td></tr> | |||
<tr><th scope="row" class="item_label_long">Nearest Refseq:</th><td class="ttb">{{{nearest_refseq}}}</td></tr> | |||
<tr><th scope="row" class="item_label_long">Nearest Ensembl:</th><td class="ttb">{{{nearest_ensembl}}}</td></tr> | |||
<tr><th scope="row" class="item_label_long">Gene Name:</th><td class="ttb">{{{gene_name}}}</td></tr> | |||
<tr><th scope="row" class="item_label_long">Gene Alias:</th><td class="ttb">{{{gene_alias}}}</td></tr> | |||
<tr><th scope="row" class="item_label_long">Gene Description:</th><td class="ttb">{{{gene_description}}}</td></tr> | |||
<tr><th scope="row" class="item_label_long">Gene Type:</th><td class="ttb">{{{gene_type}}}</td></tr> | |||
<tr><th scope="row" class="item_label_long">CpG%:</th><td class="ttb">{{{cpg_percent}}}</td></tr> | |||
<tr><th scope="row" class="item_label_long">GC%:</th><td class="ttb">{{{gc_percent}}}</td></tr> | |||
<tr><th scope="row" class="item_label_long">TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):</th><td class="ttb">{{{tata_box}}}</td></tr> | |||
</table> | |||
[[Test area::{{{param1}}}e{{{param2}}} m²|{{{param1}}} × 10<sup>{{{param2}}}</sup> m²]] | [[Test area::{{{param1}}}e{{{param2}}} m²|{{{param1}}} × 10<sup>{{{param2}}}</sup> m²]] |
Revision as of 13:33, 7 March 2018
Basic information about the TSS
|
Gene and protein annotation
|
Transcript annotation
Transcript_name: | {{{transcript_name}}} |
---|---|
Distance: | {{{distance}}} |
Num_trans: | {{{num_trans}}} |
All_trans: | :{{{all_trans}}} |
TATA-Box annotation
Distance to TSS: | {{{distance_to_tss}}} |
---|---|
Nearest PromoterID: | {{{nearest_promoter_id}}} |
Entrez ID: | {{{entrez_id}}} |
Nearest Unigene: | {{{nearest_unigene}}} |
Nearest Refseq: | {{{nearest_refseq}}} |
Nearest Ensembl: | {{{nearest_ensembl}}} |
Gene Name: | {{{gene_name}}} |
Gene Alias: | {{{gene_alias}}} |
Gene Description: | {{{gene_description}}} |
Gene Type: | {{{gene_type}}} |
CpG%: | {{{cpg_percent}}} |
GC%: | {{{gc_percent}}} |
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | {{{tata_box}}} |
{{{param1}}} × 10{{{param2}}} m²