TSS: Rfhg 100106.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetailV4 |annotation=promoter-TSS (ENST00000330992.8) |ccre_category=PLS |ccre_description=PLS,CTCF-bound (EH38D4030940,EH38E2590525) |chr=chr7 |cpg_percent=0.133333 |det...") |
No edit summary |
||
| Line 1: | Line 1: | ||
{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |annotation=promoter-TSS (NM_012133) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS,CTCF-bound (EH38D4030940,EH38E2590525) | |ccre_description=PLS,CTCF-bound (EH38D4030940,EH38E2590525) | ||
|chr=chr7 | |chr=chr7 | ||
|cpg_percent=0.133333 | |cpg_percent=0.133333 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NM_012133) | ||
|distance=0 | |distance=0 | ||
|distance_to_tss=16 | |distance_to_tss=16 | ||
|end=130668755 | |end=130668755 | ||
|entrez_id= | |entrez_id=26958 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.782609 | |gc_percent=0.782609 | ||
|gene_alias= | |gene_alias=2-COP{{!}}gamma-2-COP | ||
|gene_description= | |gene_description=coatomer protein complex subunit gamma 2 | ||
|gene_id=26958 | |gene_id=26958 | ||
|gene_name= | |gene_name=COPG2 | ||
|gene_source=HGNC:2237 | |gene_source=HGNC:2237 | ||
|gene_symbol=COPG2 | |gene_symbol=COPG2 | ||
|gene_synonyms=2-COP | |gene_synonyms=2-COP | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:2237 | |hgnc_mgi_id=HGNC:2237 | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000158623 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_012133 | ||
|nearest_refseq= | |nearest_refseq=NM_012133 | ||
|nearest_unigene= | |nearest_unigene=Hs.6421 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=130668710 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Revision as of 16:07, 22 June 2023
Basic information about the TSS
|
| |||||||||||||||
| Source datasets | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | ||||||||||||||||
| TSS cluster detected* | ||||||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D4030940,EH38E2590525) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | 16 |
|---|---|
| Nearest PromoterID: | NM_012133 |
| Entrez ID: | 26958 |
| Nearest Unigene: | Hs.6421 |
| Nearest Refseq: | NM_012133 |
| Nearest Ensembl: | ENSG00000158623 |
| Gene Name: | COPG2 |
| Gene Alias: | 2-COP|gamma-2-COP |
| Gene Type: | protein-coding |
| CpG%: | 0.133333 |
| GC%: | 0.782609 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.