TSS: Rfhg 100670.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation= | |annotation=intron (NM_001321710, intron 21 of 32) | ||
|ccre_category=N | |ccre_category=N | ||
|ccre_description=N | |ccre_description=N | ||
|chr=chr7 | |chr=chr7 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=Tigger3a{{!}}DNA{{!}}TcMar-Tigger | ||
|distance=38 | |distance=38 | ||
|distance_to_tss=- | |distance_to_tss=-170084 | ||
|end=137513821 | |end=137513821 | ||
|entrez_id= | |entrez_id=5764 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.444444 | |gc_percent=0.444444 | ||
|gene_alias= | |gene_alias=HARP{{!}}HB-GAM{{!}}HBBM{{!}}HBGF-8{{!}}HBGF8{{!}}HBNF{{!}}HBNF-1{{!}}NEGF1{{!}}OSF-1 | ||
|gene_description= | |gene_description=pleiotrophin | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name=PTN | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000105894 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_002825 | ||
|nearest_refseq= | |nearest_refseq=NM_002825 | ||
|nearest_unigene= | |nearest_unigene=Hs.371249 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=137513813 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
Revision as of 16:17, 22 June 2023
Basic information about the TSS
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| Source datasets | ||||||||||||||||
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| Protocol | ||||||||||||||||
| TSS cluster detected* | ||||||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | - |
|---|---|
| Category: | - |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -170084 |
|---|---|
| Nearest PromoterID: | NM_002825 |
| Entrez ID: | 5764 |
| Nearest Unigene: | Hs.371249 |
| Nearest Refseq: | NM_002825 |
| Nearest Ensembl: | ENSG00000105894 |
| Gene Name: | PTN |
| Gene Alias: | HARP|HB-GAM|HBBM|HBGF-8|HBGF8|HBNF|HBNF-1|NEGF1|OSF-1 |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.444444 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |