TSS: Rfhg 100996.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetailV4 |annotation=intron (ENST00000537639.5, intron 12 of 17) |ccre_category=N |ccre_description=N |chr=chr7 |cpg_percent=0.038462 |detailed_annotation=protein_coding-...") |
No edit summary |
||
| Line 1: | Line 1: | ||
{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=intron ( | |annotation=intron (NM_001318052, intron 13 of 18) | ||
|ccre_category=N | |ccre_category=N | ||
|ccre_description=N | |ccre_description=N | ||
|chr=chr7 | |chr=chr7 | ||
|cpg_percent=0.038462 | |cpg_percent=0.038462 | ||
|detailed_annotation= | |detailed_annotation=intron (NM_001318052, intron 13 of 18) | ||
|distance= | |distance= | ||
|distance_to_tss= | |distance_to_tss=-47948 | ||
|end=140527530 | |end=140527530 | ||
|entrez_id= | |entrez_id=23608 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.666667 | |gc_percent=0.666667 | ||
|gene_alias= | |gene_alias=RNF61 | ||
|gene_description= | |gene_description=makorin ring finger protein 1 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name=MKRN1 | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000133606 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_001291663 | ||
|nearest_refseq= | |nearest_refseq=NM_013446 | ||
|nearest_unigene= | |nearest_unigene=Hs.744883 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=140527504 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Revision as of 16:22, 22 June 2023
Basic information about the TSS
|
| |||||||||||||
| Source datasets | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | ||||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | - |
|---|---|
| Category: | - |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | -47948 |
|---|---|
| Nearest PromoterID: | NM_001291663 |
| Entrez ID: | 23608 |
| Nearest Unigene: | Hs.744883 |
| Nearest Refseq: | NM_013446 |
| Nearest Ensembl: | ENSG00000133606 |
| Gene Name: | MKRN1 |
| Gene Alias: | RNF61 |
| Gene Type: | protein-coding |
| CpG%: | 0.038462 |
| GC%: | 0.666667 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |