TSS: Rfhg 101580.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetailV4 |annotation=Intergenic |ccre_category=N |ccre_description=N |chr=chr7 |cpg_percent=0.000000 |detailed_annotation=Intergenic |distance= |distance_to_tss=4076 |end...") |
No edit summary |
||
| Line 1: | Line 1: | ||
{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation= | |annotation=intron (NM_001371250, intron 1 of 6) | ||
|ccre_category=N | |ccre_category=N | ||
|ccre_description=N | |ccre_description=N | ||
|chr=chr7 | |chr=chr7 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=intron (NM_001371250, intron 1 of 6) | ||
|distance= | |distance= | ||
|distance_to_tss= | |distance_to_tss=4606 | ||
|end=143376421 | |end=143376421 | ||
|entrez_id= | |entrez_id=100507507 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.500000 | |gc_percent=0.500000 | ||
|gene_alias= | |gene_alias=- | ||
|gene_description= | |gene_description=uncharacterized LOC100507507 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name=LOC100507507 | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=ncRNA | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id= | |nearest_promoter_id=NR_161353 | ||
|nearest_refseq= | |nearest_refseq=NR_161353 | ||
|nearest_unigene= | |nearest_unigene=Hs.131743 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=143376418 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Revision as of 16:31, 22 June 2023
Basic information about the TSS
|
| |||||||||||||
| Source datasets | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | ||||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | - |
|---|---|
| Category: | - |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | 4606 |
|---|---|
| Nearest PromoterID: | NR_161353 |
| Entrez ID: | 100507507 |
| Nearest Unigene: | Hs.131743 |
| Nearest Refseq: | NR_161353 |
| Nearest Ensembl: | |
| Gene Name: | LOC100507507 |
| Gene Alias: | - |
| Gene Type: | ncRNA |
| CpG%: | 0.000000 |
| GC%: | 0.500000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |