TSS: Rfhg 101654.1: Difference between revisions
From referenceTSS
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation= | |annotation=intron (NR_126022, intron 2 of 3) | ||
|ccre_category=pELS | |ccre_category=pELS | ||
|ccre_description=pELS,CTCF-bound (EH38D4042316,EH38E2598407) | |ccre_description=pELS,CTCF-bound (EH38D4042316,EH38E2598407) | ||
|chr=chr7 | |chr=chr7 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=intron (NR_126022, intron 2 of 3) | ||
|distance=0 | |distance=0 | ||
|distance_to_tss= | |distance_to_tss=3381 | ||
|end=144256256 | |end=144256256 | ||
|entrez_id= | |entrez_id=401427 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.333333 | |gc_percent=0.333333 | ||
|gene_alias= | |gene_alias=HSDJ0798C17{{!}}OR2A21 | ||
|gene_description= | |gene_description=olfactory receptor family 2 subfamily A member 7 | ||
|gene_id=401428 | |gene_id=401428 | ||
|gene_name= | |gene_name=OR2A7 | ||
|gene_source=HGNC:15413 | |gene_source=HGNC:15413 | ||
|gene_symbol=OR2A20P | |gene_symbol=OR2A20P | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:15413 | |hgnc_mgi_id=HGNC:15413 | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000243896 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_001005328 | ||
|nearest_refseq= | |nearest_refseq=NM_001005328 | ||
|nearest_unigene= | |nearest_unigene=Hs.658609 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=144256239 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Revision as of 16:32, 22 June 2023
Basic information about the TSS
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| Source datasets | ||||||||||||||
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| Protocol | ||||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | pELS,CTCF-bound (EH38D4042316,EH38E2598407) |
|---|---|
| Category: | pELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 3381 |
|---|---|
| Nearest PromoterID: | NM_001005328 |
| Entrez ID: | 401427 |
| Nearest Unigene: | Hs.658609 |
| Nearest Refseq: | NM_001005328 |
| Nearest Ensembl: | ENSG00000243896 |
| Gene Name: | OR2A7 |
| Gene Alias: | HSDJ0798C17|OR2A21 |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.333333 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.