TSS: Rfhg 10298.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|annotation=promoter-TSS (ENST00000370008.3)
|annotation=promoter-TSS (NM_007269)
|ccre_category=PLS
|ccre_category=PLS
|ccre_description=PLS,CTCF-bound (EH38D2208224,EH38E1374282)
|ccre_description=PLS,CTCF-bound (EH38D2208224,EH38E1374282)
|chr=chr1
|chr=chr1
|cpg_percent=0.067669
|cpg_percent=0.067669
|detailed_annotation=protein_coding-promoter-TSS (ENST00000370008.3)
|detailed_annotation=promoter-TSS (NM_007269)
|distance=0
|distance=0
|distance_to_tss=8
|distance_to_tss=22
|end=108746763
|end=108746763
|entrez_id=ENSG00000116266
|entrez_id=6814
|focus_ratio=NA
|focus_ratio=NA
|gc_percent=0.694030
|gc_percent=0.694030
|gene_alias=
|gene_alias=MUNC18-3{{!}}MUNC18C{{!}}PSP{{!}}UNC-18C
|gene_description=
|gene_description=syntaxin binding protein 3
|gene_id=6814
|gene_id=6814
|gene_name=syntaxin binding protein 3
|gene_name=STXBP3
|gene_source=HGNC:11446
|gene_source=HGNC:11446
|gene_symbol=STXBP3
|gene_symbol=STXBP3
|gene_synonyms=UNC-18C
|gene_synonyms=UNC-18C
|gene_type=protein_coding
|gene_type=protein-coding
|hgnc_mgi_id=HGNC:11446
|hgnc_mgi_id=HGNC:11446
|nearest_ensembl=
|nearest_ensembl=ENSG00000116266
|nearest_promoter_id=ENST00000370008.3
|nearest_promoter_id=NM_007269
|nearest_refseq=
|nearest_refseq=NM_007269
|nearest_unigene=ENST00000469338
|nearest_unigene=Hs.530436
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|species=human
|species=human
|start=108746629
|start=108746630
|strand=+
|strand=+
|tata_box=
|tata_box=

Revision as of 16:54, 22 June 2023

Basic information about the TSS

TSS ID:rfhg_10298.1
TSS ID(Version3):hg_4366.1
hg_4365.1
Species:human
Chr:chr1
Start:108746630
End:108746763
Strand:+
Source datasets
Protocol
TSS cluster detected*

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D2208224,EH38E1374282)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000483586.5:0
ENST00000370008.4:0
ENST00000469338.1:0
AK290134:0
AK312910:0
AK291322:0
AK223170:0
D63506:0
BC047764:0
BC028028:0
BC038099:0
AF032922:0
CU690494:0
GeneID:6814
HGNC/MGI_ID:HGNC:11446
UniProt_ID:O00186
Nearer transcript ids and distances:
    Gene_name:STXBP3
    Gene_symbol:STXBP3
    Gene_synonyms:UNC-18C
    Gene_source:HGNC:11446



    TATA-Box annotation

    Distance to TSS:22
    Nearest PromoterID:NM_007269
    Entrez ID:6814
    Nearest Unigene:Hs.530436
    Nearest Refseq:NM_007269
    Nearest Ensembl:ENSG00000116266
    Gene Name:STXBP3
    Gene Alias:MUNC18-3|MUNC18C|PSP|UNC-18C
    Gene Type:protein-coding
    CpG%:0.067669
    GC%:0.694030
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



    TSS expression

    Expression data not found.
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