TSS: Rfhg 105299.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetailV4 |annotation=Intergenic |ccre_category=dELS |ccre_description=dELS (EH38D4077079,EH38E2621118) |chr=chr8 |cpg_percent=0.058824 |detailed_annotation=Intergenic |di...") |
No edit summary |
||
| Line 7: | Line 7: | ||
|detailed_annotation=Intergenic | |detailed_annotation=Intergenic | ||
|distance= | |distance= | ||
|distance_to_tss=- | |distance_to_tss=-52219 | ||
|end=29402912 | |end=29402912 | ||
|entrez_id= | |entrez_id=1846 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.666667 | |gc_percent=0.666667 | ||
|gene_alias= | |gene_alias=HVH2{{!}}MKP-2{{!}}MKP2{{!}}TYP | ||
|gene_description= | |gene_description=dual specificity phosphatase 4 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name=DUSP4 | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000120875 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_001394 | ||
|nearest_refseq= | |nearest_refseq=NM_001394 | ||
|nearest_unigene= | |nearest_unigene=Hs.417962 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=29402895 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
Revision as of 17:35, 22 June 2023
Basic information about the TSS
|
| |||||||||||||
| Source datasets | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | ||||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | dELS (EH38D4077079,EH38E2621118) |
|---|---|
| Category: | dELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | -52219 |
|---|---|
| Nearest PromoterID: | NM_001394 |
| Entrez ID: | 1846 |
| Nearest Unigene: | Hs.417962 |
| Nearest Refseq: | NM_001394 |
| Nearest Ensembl: | ENSG00000120875 |
| Gene Name: | DUSP4 |
| Gene Alias: | HVH2|MKP-2|MKP2|TYP |
| Gene Type: | protein-coding |
| CpG%: | 0.058824 |
| GC%: | 0.666667 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |