TSS: Rfhg 107453.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|annotation=promoter-TSS (ENST00000520348.5)
|annotation=promoter-TSS (NR_152598)
|ccre_category=PLS
|ccre_category=PLS
|ccre_description=PLS,CTCF-bound (EH38D4102564,EH38E2637462)
|ccre_description=PLS,CTCF-bound (EH38D4102564,EH38E2637462)
|chr=chr8
|chr=chr8
|cpg_percent=0.140351
|cpg_percent=0.140351
|detailed_annotation=processed_transcript-promoter-TSS (ENST00000520348.5)
|detailed_annotation=promoter-TSS (NR_152598)
|distance=0
|distance=0
|distance_to_tss=23
|distance_to_tss=23
|end=66925547
|end=66925547
|entrez_id=ENSG00000245910
|entrez_id=641638
|focus_ratio=NA
|focus_ratio=NA
|gc_percent=0.620690
|gc_percent=0.620690
|gene_alias=
|gene_alias=HBII-276HG{{!}}NCRNA00058{{!}}U87HG
|gene_description=
|gene_description=small nucleolar RNA host gene 6
|gene_id=641638
|gene_id=641638
|gene_name=small nucleolar RNA host gene 6
|gene_name=SNHG6
|gene_source=HGNC:32965
|gene_source=HGNC:32965
|gene_symbol=SNHG6
|gene_symbol=SNHG6
|gene_synonyms=HBII-276HG NCRNA00058 U87HG
|gene_synonyms=HBII-276HG NCRNA00058 U87HG
|gene_type=processed_transcript
|gene_type=ncRNA
|hgnc_mgi_id=HGNC:32965
|hgnc_mgi_id=HGNC:32965
|nearest_ensembl=
|nearest_ensembl=ENSG00000245910
|nearest_promoter_id=ENST00000521127.1
|nearest_promoter_id=NR_152599
|nearest_refseq=
|nearest_refseq=NR_002599
|nearest_unigene=ENST00000520944
|nearest_unigene=Hs.372680
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|species=human
|species=human
|start=66925489
|start=66925490
|strand=-
|strand=-
|tata_box=
|tata_box=

Revision as of 18:12, 22 June 2023

Basic information about the TSS


TSS ID:rfhg_107453.1
TSS ID(Version3):hg_93429.1
hg_242897.1
Species:human
Chr:chr8
Start:66925490
End:66925547
Strand:-
Source datasets
Protocol
TSS cluster detected*

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation


Description:PLS,CTCF-bound (EH38D4102564,EH38E2637462)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation


Nearest transcript id and distance:ENST00000520348.5:0
ENST00000521399.5:0
ENST00000521127.1:0
AY264285:0
AK057116:0
GeneID:641638
HGNC/MGI_ID:HGNC:32965
UniProt_ID:
Nearer transcript ids and distances:
    Gene_name:SNHG6
    Gene_symbol:SNHG6
    Gene_synonyms:HBII-276HG NCRNA00058 U87HG
    Gene_source:HGNC:32965



    TATA-Box annotation


    Distance to TSS:23
    Nearest PromoterID:NR_152599
    Entrez ID:641638
    Nearest Unigene:Hs.372680
    Nearest Refseq:NR_002599
    Nearest Ensembl:ENSG00000245910
    Gene Name:SNHG6
    Gene Alias:HBII-276HG|NCRNA00058|U87HG
    Gene Type:ncRNA
    CpG%:0.140351
    GC%:0.620690
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



    TSS expression

    Expression data not found.