TSS: Rfhg 108715.1: Difference between revisions
From referenceTSS
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation= | |annotation=Intergenic | ||
|ccre_category=pELS | |ccre_category=pELS | ||
|ccre_description=pELS (EH38D4119787,EH38E2647520) | |ccre_description=pELS (EH38D4119787,EH38E2647520) | ||
|chr=chr8 | |chr=chr8 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=THE1C{{!}}LTR{{!}}ERVL-MaLR | ||
|distance=0 | |distance=0 | ||
|distance_to_tss= | |distance_to_tss=87952 | ||
|end=92877640 | |end=92877640 | ||
|entrez_id= | |entrez_id=286144 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.500000 | |gc_percent=0.500000 | ||
|gene_alias= | |gene_alias=C8orf83{{!}}PRO0845{{!}}UPF0599 | ||
|gene_description= | |gene_description=triple QxxK/R motif containing | ||
|gene_id=441369 | |gene_id=441369 | ||
|gene_name= | |gene_name=TRIQK | ||
|gene_source=EntrezGene:441369 | |gene_source=EntrezGene:441369 | ||
|gene_symbol=FLJ46284 | |gene_symbol=FLJ46284 | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000205133 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_001191036 | ||
|nearest_refseq= | |nearest_refseq=NM_001171795 | ||
|nearest_unigene= | |nearest_unigene=Hs.440643 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=92877635 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Revision as of 18:34, 22 June 2023
Basic information about the TSS
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| Source datasets | ||||||||||||||||
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| Protocol | ||||||||||||||||
| TSS cluster detected* | 4 | |||||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | pELS (EH38D4119787,EH38E2647520) |
|---|---|
| Category: | pELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 87952 |
|---|---|
| Nearest PromoterID: | NM_001191036 |
| Entrez ID: | 286144 |
| Nearest Unigene: | Hs.440643 |
| Nearest Refseq: | NM_001171795 |
| Nearest Ensembl: | ENSG00000205133 |
| Gene Name: | TRIQK |
| Gene Alias: | C8orf83|PRO0845|UPF0599 |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.500000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.