TSS: Rfhg 109469.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetailV4 |annotation=intron (ENST00000519630.1, intron 1 of 3) |ccre_category=pELS |ccre_description=pELS,CTCF-bound (EH38D4128259,EH38E2653611) |chr=chr8 |cpg_percent=0....") |
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation= | |annotation=Intergenic | ||
|ccre_category=pELS | |ccre_category=pELS | ||
|ccre_description=pELS,CTCF-bound (EH38D4128259,EH38E2653611) | |ccre_description=pELS,CTCF-bound (EH38D4128259,EH38E2653611) | ||
|chr=chr8 | |chr=chr8 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=Intergenic | ||
|distance=-353 | |distance=-353 | ||
|distance_to_tss= | |distance_to_tss=-22475 | ||
|end=102529120 | |end=102529120 | ||
|entrez_id= | |entrez_id=4956 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.384615 | |gc_percent=0.384615 | ||
|gene_alias= | |gene_alias=CT133{{!}}HSPB10{{!}}ODF{{!}}ODF2{{!}}ODF27{{!}}ODFP{{!}}ODFPG{{!}}ODFPGA{{!}}ODFPGB{{!}}RT7{{!}}SODF | ||
|gene_description= | |gene_description=outer dense fiber of sperm tails 1 | ||
|gene_id=107986898 | |gene_id=107986898 | ||
|gene_name= | |gene_name=ODF1 | ||
|gene_source=EntrezGene:107986898 | |gene_source=EntrezGene:107986898 | ||
|gene_symbol=LINC03047 | |gene_symbol=LINC03047 | ||
|gene_synonyms=KB-1980E6.3 | |gene_synonyms=KB-1980E6.3 | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000155087 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_024410 | ||
|nearest_refseq= | |nearest_refseq=NM_024410 | ||
|nearest_unigene= | |nearest_unigene=Hs.159274 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=102529108 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
Revision as of 18:47, 22 June 2023
Basic information about the TSS
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| Protocol | ||||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | pELS,CTCF-bound (EH38D4128259,EH38E2653611) |
|---|---|
| Category: | pELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -22475 |
|---|---|
| Nearest PromoterID: | NM_024410 |
| Entrez ID: | 4956 |
| Nearest Unigene: | Hs.159274 |
| Nearest Refseq: | NM_024410 |
| Nearest Ensembl: | ENSG00000155087 |
| Gene Name: | ODF1 |
| Gene Alias: | CT133|HSPB10|ODF|ODF2|ODF27|ODFP|ODFPG|ODFPGA|ODFPGB|RT7|SODF |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.384615 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.