TSS: Rfhg 110908.1: Difference between revisions
From referenceTSS
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |annotation=promoter-TSS (NR_003367) | ||
|ccre_category=pELS | |ccre_category=pELS | ||
|ccre_description=pELS,CTCF-bound (EH38D4147715,EH38E2666244) | |ccre_description=pELS,CTCF-bound (EH38D4147715,EH38E2666244) | ||
|chr=chr8 | |chr=chr8 | ||
|cpg_percent=0.035714 | |cpg_percent=0.035714 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NR_003367) | ||
|distance= | |distance= | ||
|distance_to_tss=-550 | |distance_to_tss=-550 | ||
|end=127793997 | |end=127793997 | ||
|entrez_id= | |entrez_id=5820 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.586207 | |gc_percent=0.586207 | ||
|gene_alias= | |gene_alias=LINC00079{{!}}MIR1204HG{{!}}NCRNA00079{{!}}onco-lncRNA-100 | ||
|gene_description= | |gene_description=Pvt1 oncogene | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name=PVT1 | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=ncRNA | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000249859 | ||
|nearest_promoter_id= | |nearest_promoter_id=NR_003367 | ||
|nearest_refseq= | |nearest_refseq=NR_003367 | ||
|nearest_unigene= | |nearest_unigene=Hs.133107 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=127793969 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
Revision as of 19:12, 22 June 2023
Basic information about the TSS
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| Source datasets | ||||||||||||||
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| Protocol | ||||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | pELS,CTCF-bound (EH38D4147715,EH38E2666244) |
|---|---|
| Category: | pELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -550 |
|---|---|
| Nearest PromoterID: | NR_003367 |
| Entrez ID: | 5820 |
| Nearest Unigene: | Hs.133107 |
| Nearest Refseq: | NR_003367 |
| Nearest Ensembl: | ENSG00000249859 |
| Gene Name: | PVT1 |
| Gene Alias: | LINC00079|MIR1204HG|NCRNA00079|onco-lncRNA-100 |
| Gene Type: | ncRNA |
| CpG%: | 0.035714 |
| GC%: | 0.586207 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |