TSS: Rfhg 113977.1: Difference between revisions
From referenceTSS
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |annotation=promoter-TSS (NM_000605) | ||
|ccre_category=N | |ccre_category=N | ||
|ccre_description=N | |ccre_description=N | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NM_000605) | ||
|distance=0 | |distance=0 | ||
|distance_to_tss= | |distance_to_tss=1 | ||
|end=21385398 | |end=21385398 | ||
|entrez_id= | |entrez_id=3440 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.333333 | |gc_percent=0.333333 | ||
|gene_alias= | |gene_alias=IFN-alphaA{{!}}IFNA{{!}}IFNA2B{{!}}INFA2 | ||
|gene_description= | |gene_description=interferon alpha 2 | ||
|gene_id=3440 | |gene_id=3440 | ||
|gene_name= | |gene_name=IFNA2 | ||
|gene_source=HGNC:5423 | |gene_source=HGNC:5423 | ||
|gene_symbol=IFNA2 | |gene_symbol=IFNA2 | ||
|gene_synonyms=IFN-alphaA IFNA | |gene_synonyms=IFN-alphaA IFNA | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:5423 | |hgnc_mgi_id=HGNC:5423 | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000188379 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_000605 | ||
|nearest_refseq= | |nearest_refseq=NM_000605 | ||
|nearest_unigene= | |nearest_unigene=Hs.211575 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=21385396 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Revision as of 20:05, 22 June 2023
Basic information about the TSS
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| Source datasets | ||||||||||||||
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| Protocol | ||||||||||||||
| TSS cluster detected* | 2 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | - |
|---|---|
| Category: | - |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 1 |
|---|---|
| Nearest PromoterID: | NM_000605 |
| Entrez ID: | 3440 |
| Nearest Unigene: | Hs.211575 |
| Nearest Refseq: | NM_000605 |
| Nearest Ensembl: | ENSG00000188379 |
| Gene Name: | IFNA2 |
| Gene Alias: | IFN-alphaA|IFNA|IFNA2B|INFA2 |
| Gene Description: | interferon alpha 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.333333 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.