TSS: Rfhg 114058.1: Difference between revisions
From referenceTSS
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |annotation=promoter-TSS (NM_058195) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS,CTCF-bound (EH38D4179862,EH38E2687292) | |ccre_description=PLS,CTCF-bound (EH38D4179862,EH38E2687292) | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.109091 | |cpg_percent=0.109091 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NM_058195) | ||
|distance=0 | |distance=0 | ||
|distance_to_tss=- | |distance_to_tss=-7 | ||
|end=21995359 | |end=21995359 | ||
|entrez_id= | |entrez_id=1029 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.642857 | |gc_percent=0.642857 | ||
|gene_alias= | |gene_alias=ARF{{!}}CDK4I{{!}}CDKN2{{!}}CMM2{{!}}INK4{{!}}INK4A{{!}}MLM{{!}}MTS-1{{!}}MTS1{{!}}P14{{!}}P14ARF{{!}}P16{{!}}P16-INK4A{{!}}P16INK4{{!}}P16INK4A{{!}}P19{{!}}P19ARF{{!}}TP16 | ||
|gene_description= | |gene_description=cyclin dependent kinase inhibitor 2A | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name=CDKN2A | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000147889 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_001363763 | ||
|nearest_refseq= | |nearest_refseq=NM_000077 | ||
|nearest_unigene= | |nearest_unigene=Hs.512599 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=21995304 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Revision as of 20:06, 22 June 2023
Basic information about the TSS
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| Source datasets | ||||||||||||||
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| Protocol | ||||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D4179862,EH38E2687292) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -7 |
|---|---|
| Nearest PromoterID: | NM_001363763 |
| Entrez ID: | 1029 |
| Nearest Unigene: | Hs.512599 |
| Nearest Refseq: | NM_000077 |
| Nearest Ensembl: | ENSG00000147889 |
| Gene Name: | CDKN2A |
| Gene Alias: | ARF|CDK4I|CDKN2|CMM2|INK4|INK4A|MLM|MTS-1|MTS1|P14|P14ARF|P16|P16-INK4A|P16INK4|P16INK4A|P19|P19ARF|TP16 |
| Gene Type: | protein-coding |
| CpG%: | 0.109091 |
| GC%: | 0.642857 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |