TSS: Rfhg 114287.1: Difference between revisions
From referenceTSS
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation= | |annotation=Intergenic | ||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS (EH38D4184426,EH38E2689598) | |ccre_description=PLS (EH38D4184426,EH38E2689598) | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=LTR2752{{!}}LTR{{!}}ERV1 | ||
|distance=-67 | |distance=-67 | ||
|distance_to_tss= | |distance_to_tss=-166485 | ||
|end=30574944 | |end=30574944 | ||
|entrez_id= | |entrez_id=401497 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.545455 | |gc_percent=0.545455 | ||
|gene_alias= | |gene_alias=- | ||
|gene_description= | |gene_description=long intergenic non-protein coding RNA 1242 | ||
|gene_id=401497 | |gene_id=401497 | ||
|gene_name= | |gene_name=LINC01242 | ||
|gene_source=HGNC:49810 | |gene_source=HGNC:49810 | ||
|gene_symbol=LINC01242 | |gene_symbol=LINC01242 | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=ncRNA | ||
|hgnc_mgi_id=HGNC:49810 | |hgnc_mgi_id=HGNC:49810 | ||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id= | |nearest_promoter_id=NR_046204 | ||
|nearest_refseq= | |nearest_refseq=NR_046204 | ||
|nearest_unigene= | |nearest_unigene=Hs.680131 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=30574934 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Revision as of 20:10, 22 June 2023
Basic information about the TSS
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| Source datasets | ||||||||||||||
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| Protocol | ||||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS (EH38D4184426,EH38E2689598) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -166485 |
|---|---|
| Nearest PromoterID: | NR_046204 |
| Entrez ID: | 401497 |
| Nearest Unigene: | Hs.680131 |
| Nearest Refseq: | NR_046204 |
| Nearest Ensembl: | |
| Gene Name: | LINC01242 |
| Gene Alias: | - |
| Gene Description: | long intergenic non-protein coding RNA 1242 |
| Gene Type: | ncRNA |
| CpG%: | 0.000000 |
| GC%: | 0.545455 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.