TSS: Rfhg 114599.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetailV4 |annotation=promoter-TSS (ENST00000297613.4) |ccre_category=PLS |ccre_description=PLS,CTCF-bound (EH38D4187181,EH38E2691321) |chr=chr9 |cpg_percent=0.170213 |det...") |
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |annotation=promoter-TSS (NM_148179) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS,CTCF-bound (EH38D4187181,EH38E2691321) | |ccre_description=PLS,CTCF-bound (EH38D4187181,EH38E2691321) | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.170213 | |cpg_percent=0.170213 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NM_148179) | ||
|distance=0 | |distance=0 | ||
|distance_to_tss= | |distance_to_tss=-7 | ||
|end=34612128 | |end=34612128 | ||
|entrez_id= | |entrez_id=138716 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.750000 | |gc_percent=0.750000 | ||
|gene_alias= | |gene_alias=C9orf23{{!}}bA296L22.5 | ||
|gene_description= | |gene_description=ribonuclease P/MRP subunit p25 like | ||
|gene_id=138716 | |gene_id=138716 | ||
|gene_name= | |gene_name=RPP25L | ||
|gene_source=HGNC:19909 | |gene_source=HGNC:19909 | ||
|gene_symbol=RPP25L | |gene_symbol=RPP25L | ||
|gene_synonyms=MGC29635 bA296L22.5 | |gene_synonyms=MGC29635 bA296L22.5 | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:19909 | |hgnc_mgi_id=HGNC:19909 | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000164967 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_148178 | ||
|nearest_refseq= | |nearest_refseq=NM_148178 | ||
|nearest_unigene= | |nearest_unigene=Hs.15961 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=34612081 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Revision as of 20:16, 22 June 2023
Basic information about the TSS
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| Source datasets | ||||||||||||||
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| Protocol | ||||||||||||||
| TSS cluster detected* | 13 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D4187181,EH38E2691321) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -7 |
|---|---|
| Nearest PromoterID: | NM_148178 |
| Entrez ID: | 138716 |
| Nearest Unigene: | Hs.15961 |
| Nearest Refseq: | NM_148178 |
| Nearest Ensembl: | ENSG00000164967 |
| Gene Name: | RPP25L |
| Gene Alias: | C9orf23|bA296L22.5 |
| Gene Description: | ribonuclease P/MRP subunit p25 like |
| Gene Type: | protein-coding |
| CpG%: | 0.170213 |
| GC%: | 0.750000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.