TSS: Rfhg 115596.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetailV4 |annotation=intron (ENST00000643676.1, intron 1 of 2) |ccre_category=dELS |ccre_description=dELS,CTCF-bound (EH38D4195397,EH38E2696867) |chr=chr9 |cpg_percent=0....") |
No edit summary |
||
| Line 1: | Line 1: | ||
{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=intron ( | |annotation=intron (NM_138691, intron 1 of 23) | ||
|ccre_category=dELS | |ccre_category=dELS | ||
|ccre_description=dELS,CTCF-bound (EH38D4195397,EH38E2696867) | |ccre_description=dELS,CTCF-bound (EH38D4195397,EH38E2696867) | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.071429 | |cpg_percent=0.071429 | ||
|detailed_annotation= | |detailed_annotation=intron (NM_138691, intron 1 of 23) | ||
|distance= | |distance= | ||
|distance_to_tss=5822 | |distance_to_tss=5822 | ||
|end=72527630 | |end=72527630 | ||
|entrez_id= | |entrez_id=117531 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.533333 | |gc_percent=0.533333 | ||
|gene_alias= | |gene_alias=DFNA36{{!}}DFNB11{{!}}DFNB7 | ||
|gene_description= | |gene_description=transmembrane channel like 1 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name=TMC1 | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000165091 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_138691 | ||
|nearest_refseq= | |nearest_refseq=NM_138691 | ||
|nearest_unigene= | |nearest_unigene=Hs.670211 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=72527616 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
Revision as of 20:32, 22 June 2023
Basic information about the TSS
|
| |||||||||||||
| Source datasets | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | ||||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | dELS,CTCF-bound (EH38D4195397,EH38E2696867) |
|---|---|
| Category: | dELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | 5822 |
|---|---|
| Nearest PromoterID: | NM_138691 |
| Entrez ID: | 117531 |
| Nearest Unigene: | Hs.670211 |
| Nearest Refseq: | NM_138691 |
| Nearest Ensembl: | ENSG00000165091 |
| Gene Name: | TMC1 |
| Gene Alias: | DFNA36|DFNB11|DFNB7 |
| Gene Type: | protein-coding |
| CpG%: | 0.071429 |
| GC%: | 0.533333 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |