TSS: Rfhg 115636.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetailV4 |annotation=exon (ENST00000297785.7, exon 3 of 13) |ccre_category=dELS |ccre_description=dELS,CTCF-bound (EH38D4195712,EH38E2697093) |chr=chr9 |cpg_percent=0.050...") |
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=exon ( | |annotation=exon (NM_000689, exon 3 of 13) | ||
|ccre_category=dELS | |ccre_category=dELS | ||
|ccre_description=dELS,CTCF-bound (EH38D4195712,EH38E2697093) | |ccre_description=dELS,CTCF-bound (EH38D4195712,EH38E2697093) | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.050360 | |cpg_percent=0.050360 | ||
|detailed_annotation= | |detailed_annotation=exon (NM_000689, exon 3 of 13) | ||
|distance= | |distance= | ||
|distance_to_tss= | |distance_to_tss=22102 | ||
|end=72931021 | |end=72931021 | ||
|entrez_id= | |entrez_id=216 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.507143 | |gc_percent=0.507143 | ||
|gene_alias= | |gene_alias=ALDC{{!}}ALDH-E1{{!}}ALDH1{{!}}ALDH11{{!}}HEL-9{{!}}HEL-S-53e{{!}}HEL12{{!}}PUMB1{{!}}RALDH1 | ||
|gene_description= | |gene_description=aldehyde dehydrogenase 1 family member A1 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name=ALDH1A1 | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000165092 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_000689 | ||
|nearest_refseq= | |nearest_refseq=NM_000689 | ||
|nearest_unigene= | |nearest_unigene=Hs.76392 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=72930882 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Revision as of 20:33, 22 June 2023
Basic information about the TSS
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| Source datasets | ||||||||||||||||
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| Protocol | ||||||||||||||||
| TSS cluster detected* | ||||||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | dELS,CTCF-bound (EH38D4195712,EH38E2697093) |
|---|---|
| Category: | dELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 22102 |
|---|---|
| Nearest PromoterID: | NM_000689 |
| Entrez ID: | 216 |
| Nearest Unigene: | Hs.76392 |
| Nearest Refseq: | NM_000689 |
| Nearest Ensembl: | ENSG00000165092 |
| Gene Name: | ALDH1A1 |
| Gene Alias: | ALDC|ALDH-E1|ALDH1|ALDH11|HEL-9|HEL-S-53e|HEL12|PUMB1|RALDH1 |
| Gene Type: | protein-coding |
| CpG%: | 0.050360 |
| GC%: | 0.507143 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |