TSS: Rfhg 116738.1: Difference between revisions
From referenceTSS
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |annotation=promoter-TSS (NM_015250) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS,CTCF-bound (EH38D4211879,EH38E2707797) | |ccre_description=PLS,CTCF-bound (EH38D4211879,EH38E2707797) | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.153285 | |cpg_percent=0.153285 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NM_015250) | ||
|distance=0 | |distance=0 | ||
|distance_to_tss= | |distance_to_tss=93 | ||
|end=92764877 | |end=92764877 | ||
|entrez_id= | |entrez_id=23299 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.778182 | |gc_percent=0.778182 | ||
|gene_alias= | |gene_alias=SMALED2{{!}}SMALED2A{{!}}SMALED2B{{!}}bA526D8.1 | ||
|gene_description= | |gene_description=BICD cargo adaptor 2 | ||
|gene_id=23299 | |gene_id=23299 | ||
|gene_name= | |gene_name=BICD2 | ||
|gene_source=HGNC:17208 | |gene_source=HGNC:17208 | ||
|gene_symbol=BICD2 | |gene_symbol=BICD2 | ||
|gene_synonyms=KIAA0699 | |gene_synonyms=KIAA0699 | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:17208 | |hgnc_mgi_id=HGNC:17208 | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000185963 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_015250 | ||
|nearest_refseq= | |nearest_refseq=NM_015250 | ||
|nearest_unigene= | |nearest_unigene=Hs.436939 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=92764603 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Revision as of 20:51, 22 June 2023
Basic information about the TSS
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| Source datasets | ||||||||||||||||
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| Protocol | ||||||||||||||||
| TSS cluster detected* | ||||||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D4211879,EH38E2707797) |
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| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 93 |
|---|---|
| Nearest PromoterID: | NM_015250 |
| Entrez ID: | 23299 |
| Nearest Unigene: | Hs.436939 |
| Nearest Refseq: | NM_015250 |
| Nearest Ensembl: | ENSG00000185963 |
| Gene Name: | BICD2 |
| Gene Alias: | SMALED2|SMALED2A|SMALED2B|bA526D8.1 |
| Gene Description: | BICD cargo adaptor 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.153285 |
| GC%: | 0.778182 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.