TSS: Rfhg 117731.1: Difference between revisions
From referenceTSS
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation= | |annotation=intron (NM_001351498, intron 1 of 9) | ||
|ccre_category=N | |ccre_category=N | ||
|ccre_description=N | |ccre_description=N | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=CpG | ||
|distance=0 | |distance=0 | ||
|distance_to_tss= | |distance_to_tss=175 | ||
|end=105558311 | |end=105558311 | ||
|entrez_id= | |entrez_id=2218 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.727273 | |gc_percent=0.727273 | ||
|gene_alias= | |gene_alias=CMD1X{{!}}FCMD{{!}}LGMD2M{{!}}LGMDR13{{!}}MDDGA4{{!}}MDDGB4{{!}}MDDGC4 | ||
|gene_description= | |gene_description=fukutin | ||
|gene_id=105376199 | |gene_id=105376199 | ||
|gene_name=FKTN | |gene_name=FKTN | ||
|gene_source=EntrezGene:105376199 | |gene_source=EntrezGene:105376199 | ||
|gene_symbol=FKTN-AS1 | |gene_symbol=FKTN-AS1 | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000106692 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_001351496 | ||
|nearest_refseq= | |nearest_refseq=NM_006731 | ||
|nearest_unigene= | |nearest_unigene=Hs.55777 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=105558301 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Revision as of 21:08, 22 June 2023
Basic information about the TSS
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| Source datasets | ||||||||||||||
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| Protocol | ||||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | - |
|---|---|
| Category: | - |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 175 |
|---|---|
| Nearest PromoterID: | NM_001351496 |
| Entrez ID: | 2218 |
| Nearest Unigene: | Hs.55777 |
| Nearest Refseq: | NM_006731 |
| Nearest Ensembl: | ENSG00000106692 |
| Gene Name: | FKTN |
| Gene Alias: | CMD1X|FCMD|LGMD2M|LGMDR13|MDDGA4|MDDGB4|MDDGC4 |
| Gene Description: | fukutin |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.727273 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.