TSS: Rfhg 117768.1: Difference between revisions

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(Created page with "{{TSSDetailV4 |annotation=intron (ENST00000472574.1, intron 1 of 3) |ccre_category=pELS |ccre_description=pELS,CTCF-bound (EH38D4222766,EH38E2715029) |chr=chr9 |cpg_percent=0....")
 
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{{TSSDetailV4
{{TSSDetailV4
|annotation=intron (ENST00000472574.1, intron 1 of 3)
|annotation=intron (NM_001347997, intron 1 of 12)
|ccre_category=pELS
|ccre_category=pELS
|ccre_description=pELS,CTCF-bound (EH38D4222766,EH38E2715029)
|ccre_description=pELS,CTCF-bound (EH38D4222766,EH38E2715029)
|chr=chr9
|chr=chr9
|cpg_percent=0.000000
|cpg_percent=0.000000
|detailed_annotation=protein_coding-intron (ENST00000277225.9, intron 1 of 12)
|detailed_annotation=intron (NM_001347997, intron 1 of 12)
|distance=
|distance=
|distance_to_tss=1477
|distance_to_tss=1477
|end=106864645
|end=106864645
|entrez_id=ENSG00000148143
|entrez_id=58499
|focus_ratio=NA
|focus_ratio=NA
|gc_percent=0.800000
|gc_percent=0.800000
|gene_alias=
|gene_alias=ZFPIP{{!}}Zfp462
|gene_description=
|gene_description=zinc finger protein 462
|gene_id=
|gene_id=
|gene_name=
|gene_name=ZNF462
|gene_source=
|gene_source=
|gene_symbol=
|gene_symbol=
|gene_synonyms=
|gene_synonyms=
|gene_type=protein_coding
|gene_type=protein-coding
|hgnc_mgi_id=
|hgnc_mgi_id=
|nearest_ensembl=
|nearest_ensembl=ENSG00000148143
|nearest_promoter_id=ENST00000472574.1
|nearest_promoter_id=NM_001347997
|nearest_refseq=
|nearest_refseq=NM_021224
|nearest_unigene=ENST00000441147
|nearest_unigene=Hs.370379
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|species=human
|species=human
|start=106864640
|start=106864641
|strand=-
|strand=-
|tata_box=
|tata_box=

Revision as of 21:09, 22 June 2023

Basic information about the TSS


TSS ID:rfhg_117768.1
Species:human
Chr:chr9
Start:106864641
End:106864645
Strand:-
Source datasets
Protocol
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation


Description:pELS,CTCF-bound (EH38D4222766,EH38E2715029)
Category:pELS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation


Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
    Gene_name:ZNF462
    Gene_symbol:
    Gene_synonyms:
    Gene_source:



    TATA-Box annotation


    Distance to TSS:1477
    Nearest PromoterID:NM_001347997
    Entrez ID:58499
    Nearest Unigene:Hs.370379
    Nearest Refseq:NM_021224
    Nearest Ensembl:ENSG00000148143
    Gene Name:ZNF462
    Gene Alias:ZFPIP|Zfp462
    Gene Type:protein-coding
    CpG%:0.000000
    GC%:0.800000
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):