TSS: Rfhg 119623.1: Difference between revisions
From referenceTSS
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |annotation=promoter-TSS (NM_175040) | ||
|ccre_category=N | |ccre_category=N | ||
|ccre_description=N | |ccre_description=N | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NM_175040) | ||
|distance=0 | |distance=0 | ||
|distance_to_tss= | |distance_to_tss=94 | ||
|end=127916932 | |end=127916932 | ||
|entrez_id= | |entrez_id=27090 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=1.000000 | |gc_percent=1.000000 | ||
|gene_alias= | |gene_alias=IV{{!}}SIAT3-C{{!}}SIAT3C{{!}}SIAT7-D{{!}}SIAT7D{{!}}ST6GALNACIV{{!}}ST6GalNAc | ||
|gene_description= | |gene_description=ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 4 | ||
|gene_id=27090 | |gene_id=27090 | ||
|gene_name= | |gene_name=ST6GALNAC4 | ||
|gene_source=HGNC:17846 | |gene_source=HGNC:17846 | ||
|gene_symbol=ST6GALNAC4 | |gene_symbol=ST6GALNAC4 | ||
|gene_synonyms=SIAT3C ST6GALNACIV | |gene_synonyms=SIAT3C ST6GALNACIV | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:17846 | |hgnc_mgi_id=HGNC:17846 | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000136840 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_175040 | ||
|nearest_refseq= | |nearest_refseq=NM_014403 | ||
|nearest_unigene= | |nearest_unigene=Hs.3972 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=127916932 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Revision as of 21:41, 22 June 2023
Basic information about the TSS
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| Source datasets | ||||||||||||||
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| Protocol | ||||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | - |
|---|---|
| Category: | - |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 94 |
|---|---|
| Nearest PromoterID: | NM_175040 |
| Entrez ID: | 27090 |
| Nearest Unigene: | Hs.3972 |
| Nearest Refseq: | NM_014403 |
| Nearest Ensembl: | ENSG00000136840 |
| Gene Name: | ST6GALNAC4 |
| Gene Alias: | IV|SIAT3-C|SIAT3C|SIAT7-D|SIAT7D|ST6GALNACIV|ST6GalNAc |
| Gene Description: | ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 4 |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 1.000000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.