TSS: Rfhg 119639.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetailV4 |annotation=exon (ENST00000300434.3, exon 6 of 6) |ccre_category=dELS |ccre_description=dELS,CTCF-bound (EH38D4242133,EH38E2729029) |chr=chr9 |cpg_percent=0.0000...") |
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation= | |annotation=3' UTR (NM_203305, exon 8 of 8) | ||
|ccre_category=dELS | |ccre_category=dELS | ||
|ccre_description=dELS,CTCF-bound (EH38D4242133,EH38E2729029) | |ccre_description=dELS,CTCF-bound (EH38D4242133,EH38E2729029) | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=3' UTR (NM_203305, exon 8 of 8) | ||
|distance=-306 | |distance=-306 | ||
|distance_to_tss= | |distance_to_tss=-4318 | ||
|end=127942817 | |end=127942817 | ||
|entrez_id= | |entrez_id=8818 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.666667 | |gc_percent=0.666667 | ||
|gene_alias= | |gene_alias=CDG1U | ||
|gene_description= | |gene_description=dolichyl-phosphate mannosyltransferase subunit 2, regulatory | ||
|gene_id=399665 | |gene_id=399665 | ||
|gene_name= | |gene_name=DPM2 | ||
|gene_source=HGNC:31419 | |gene_source=HGNC:31419 | ||
|gene_symbol=EEIG1 | |gene_symbol=EEIG1 | ||
|gene_synonyms=Eeig1 SYM-3A bA203J24.7 | |gene_synonyms=Eeig1 SYM-3A bA203J24.7 | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:31419 | |hgnc_mgi_id=HGNC:31419 | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000136908 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_003863 | ||
|nearest_refseq= | |nearest_refseq=NM_003863 | ||
|nearest_unigene= | |nearest_unigene=Hs.108973 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=127942788 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Revision as of 21:42, 22 June 2023
Basic information about the TSS
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| Source datasets | ||||||||||||||
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| Protocol | ||||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | dELS,CTCF-bound (EH38D4242133,EH38E2729029) |
|---|---|
| Category: | dELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -4318 |
|---|---|
| Nearest PromoterID: | NM_003863 |
| Entrez ID: | 8818 |
| Nearest Unigene: | Hs.108973 |
| Nearest Refseq: | NM_003863 |
| Nearest Ensembl: | ENSG00000136908 |
| Gene Name: | DPM2 |
| Gene Alias: | CDG1U |
| Gene Description: | dolichyl-phosphate mannosyltransferase subunit 2, regulatory |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.666667 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.