TSS: Rfhg 119655.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetailV4 |annotation=promoter-TSS (ENST00000493175.1) |ccre_category=pELS |ccre_description=pELS,CTCF-bound (EH38D4242203,EH38E2729092) |chr=chr9 |cpg_percent=0.000000 |d...") |
No edit summary |
||
| Line 1: | Line 1: | ||
{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation= | |annotation=exon (NM_001035254, exon 1 of 11) | ||
|ccre_category=pELS | |ccre_category=pELS | ||
|ccre_description=pELS,CTCF-bound (EH38D4242203,EH38E2729092) | |ccre_description=pELS,CTCF-bound (EH38D4242203,EH38E2729092) | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=exon (NM_001035254, exon 1 of 11) | ||
|distance=-78 | |distance=-78 | ||
|distance_to_tss= | |distance_to_tss=989 | ||
|end=127980000 | |end=127980000 | ||
|entrez_id= | |entrez_id=399665 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=1.000000 | |gc_percent=1.000000 | ||
|gene_alias= | |gene_alias=C9orf132{{!}}EEIG1{{!}}SYM-3A{{!}}bA203J24.7 | ||
|gene_description= | |gene_description=family with sequence similarity 102 member A | ||
|gene_id=399665 | |gene_id=399665 | ||
|gene_name= | |gene_name=FAM102A | ||
|gene_source=HGNC:31419 | |gene_source=HGNC:31419 | ||
|gene_symbol=EEIG1 | |gene_symbol=EEIG1 | ||
|gene_synonyms=Eeig1 SYM-3A bA203J24.7 | |gene_synonyms=Eeig1 SYM-3A bA203J24.7 | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:31419 | |hgnc_mgi_id=HGNC:31419 | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000167106 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_001035254 | ||
|nearest_refseq= | |nearest_refseq=NM_203305 | ||
|nearest_unigene= | |nearest_unigene=Hs.535972 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=127980000 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Revision as of 21:42, 22 June 2023
Basic information about the TSS
|
| |||||||||||||
| Source datasets | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | ||||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | pELS,CTCF-bound (EH38D4242203,EH38E2729092) |
|---|---|
| Category: | pELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | 989 |
|---|---|
| Nearest PromoterID: | NM_001035254 |
| Entrez ID: | 399665 |
| Nearest Unigene: | Hs.535972 |
| Nearest Refseq: | NM_203305 |
| Nearest Ensembl: | ENSG00000167106 |
| Gene Name: | FAM102A |
| Gene Alias: | C9orf132|EEIG1|SYM-3A|bA203J24.7 |
| Gene Description: | family with sequence similarity 102 member A |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 1.000000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.