TSS: Rfhg 121254.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |annotation=promoter-TSS (NM_152571) | ||
|ccre_category=pELS | |ccre_category=pELS | ||
|ccre_description=pELS,CTCF-bound (EH38D4252307,EH38E2736704) | |ccre_description=pELS,CTCF-bound (EH38D4252307,EH38E2736704) | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.025641 | |cpg_percent=0.025641 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NM_152571) | ||
|distance= | |distance= | ||
|distance_to_tss=- | |distance_to_tss=-455 | ||
|end=136482575 | |end=136482575 | ||
|entrez_id= | |entrez_id=158055 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.425000 | |gc_percent=0.425000 | ||
|gene_alias= | |gene_alias=- | ||
|gene_description= | |gene_description=chromosome 9 open reading frame 163 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name=C9orf163 | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_152571 | ||
|nearest_refseq= | |nearest_refseq=NM_152571 | ||
|nearest_unigene= | |nearest_unigene=Hs.212613 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=136482536 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= |
Revision as of 22:09, 22 June 2023
Basic information about the TSS
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Source datasets | ||||||||||||||
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Protocol | ||||||||||||||
TSS cluster detected* | 1 |
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
Description: | pELS,CTCF-bound (EH38D4252307,EH38E2736704) |
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Category: | pELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
Distance to TSS: | -455 |
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Nearest PromoterID: | NM_152571 |
Entrez ID: | 158055 |
Nearest Unigene: | Hs.212613 |
Nearest Refseq: | NM_152571 |
Nearest Ensembl: | |
Gene Name: | C9orf163 |
Gene Alias: | - |
Gene Type: | protein-coding |
CpG%: | 0.025641 |
GC%: | 0.425000 |
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |