TSS: Rfhg 121254.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|annotation=promoter-TSS (ENST00000354376.3)
|annotation=promoter-TSS (NM_152571)
|ccre_category=pELS
|ccre_category=pELS
|ccre_description=pELS,CTCF-bound (EH38D4252307,EH38E2736704)
|ccre_description=pELS,CTCF-bound (EH38D4252307,EH38E2736704)
|chr=chr9
|chr=chr9
|cpg_percent=0.025641
|cpg_percent=0.025641
|detailed_annotation=lincRNA-promoter-TSS (ENST00000354376.3)
|detailed_annotation=promoter-TSS (NM_152571)
|distance=
|distance=
|distance_to_tss=-940
|distance_to_tss=-455
|end=136482575
|end=136482575
|entrez_id=ENSG00000196366
|entrez_id=158055
|focus_ratio=NA
|focus_ratio=NA
|gc_percent=0.425000
|gc_percent=0.425000
|gene_alias=
|gene_alias=-
|gene_description=
|gene_description=chromosome 9 open reading frame 163
|gene_id=
|gene_id=
|gene_name=
|gene_name=C9orf163
|gene_source=
|gene_source=
|gene_symbol=
|gene_symbol=
|gene_synonyms=
|gene_synonyms=
|gene_type=lincRNA
|gene_type=protein-coding
|hgnc_mgi_id=
|hgnc_mgi_id=
|nearest_ensembl=
|nearest_ensembl=
|nearest_promoter_id=ENST00000624034.1
|nearest_promoter_id=NM_152571
|nearest_refseq=
|nearest_refseq=NM_152571
|nearest_unigene=ENST00000624034
|nearest_unigene=Hs.212613
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|species=human
|species=human
|start=136482535
|start=136482536
|strand=+
|strand=+
|tata_box=
|tata_box=

Revision as of 22:09, 22 June 2023

Basic information about the TSS


TSS ID:rfhg_121254.1
Species:human
Chr:chr9
Start:136482536
End:136482575
Strand:+
Source datasets
Protocol
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation


Description:pELS,CTCF-bound (EH38D4252307,EH38E2736704)
Category:pELS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation


Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
    Gene_name:C9orf163
    Gene_symbol:
    Gene_synonyms:
    Gene_source:



    TATA-Box annotation


    Distance to TSS:-455
    Nearest PromoterID:NM_152571
    Entrez ID:158055
    Nearest Unigene:Hs.212613
    Nearest Refseq:NM_152571
    Nearest Ensembl:
    Gene Name:C9orf163
    Gene Alias:-
    Gene Type:protein-coding
    CpG%:0.025641
    GC%:0.425000
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):