TSS: Rfhg 121377.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetailV4 |annotation=TTS (ENST00000338005.6) |ccre_category=pELS |ccre_description=pELS,CTCF-bound (EH38D4252841,EH38E2737182) |chr=chr9 |cpg_percent=0.179487 |detailed_a...") |
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=TTS ( | |annotation=TTS (NM_001039374) | ||
|ccre_category=pELS | |ccre_category=pELS | ||
|ccre_description=pELS,CTCF-bound (EH38D4252841,EH38E2737182) | |ccre_description=pELS,CTCF-bound (EH38D4252841,EH38E2737182) | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.179487 | |cpg_percent=0.179487 | ||
|detailed_annotation= | |detailed_annotation=TTS (NM_001039374) | ||
|distance=-246 | |distance=-246 | ||
|distance_to_tss=266 | |distance_to_tss=266 | ||
|end=136808602 | |end=136808602 | ||
|entrez_id= | |entrez_id=100131193 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.775000 | |gc_percent=0.775000 | ||
|gene_alias= | |gene_alias=KIAA1984-AS1 | ||
|gene_description= | |gene_description=CCDC183 antisense RNA 1 | ||
|gene_id=100131193 | |gene_id=100131193 | ||
|gene_name=CCDC183 | |gene_name=CCDC183-AS1 | ||
|gene_source=HGNC:44105 | |gene_source=HGNC:44105 | ||
|gene_symbol=CCDC183-AS1 | |gene_symbol=CCDC183-AS1 | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=ncRNA | ||
|hgnc_mgi_id=HGNC:44105 | |hgnc_mgi_id=HGNC:44105 | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000228544 | ||
|nearest_promoter_id= | |nearest_promoter_id=NR_024580 | ||
|nearest_refseq= | |nearest_refseq=NR_024580 | ||
|nearest_unigene= | |nearest_unigene=Hs.734812 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=136808563 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Revision as of 22:11, 22 June 2023
Basic information about the TSS
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| Source datasets | ||||||||||||||
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| Protocol | ||||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | pELS,CTCF-bound (EH38D4252841,EH38E2737182) |
|---|---|
| Category: | pELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 266 |
|---|---|
| Nearest PromoterID: | NR_024580 |
| Entrez ID: | 100131193 |
| Nearest Unigene: | Hs.734812 |
| Nearest Refseq: | NR_024580 |
| Nearest Ensembl: | ENSG00000228544 |
| Gene Name: | CCDC183-AS1 |
| Gene Alias: | KIAA1984-AS1 |
| Gene Type: | ncRNA |
| CpG%: | 0.179487 |
| GC%: | 0.775000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.