TSS: Rfhg 122129.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetailV4 |annotation=Intergenic |ccre_category=dELS |ccre_description=dELS (EH38D2307530,EH38E1443274) |chr=chr10 |cpg_percent=0.031250 |detailed_annotation=Intergenic |d...") |
No edit summary |
||
| Line 5: | Line 5: | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.031250 | |cpg_percent=0.031250 | ||
|detailed_annotation= | |detailed_annotation=MIRb{{!}}SINE{{!}}MIR | ||
|distance= | |distance= | ||
|distance_to_tss= | |distance_to_tss=41749 | ||
|end=3875715 | |end=3875715 | ||
|entrez_id= | |entrez_id=105376365 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.393939 | |gc_percent=0.393939 | ||
|gene_alias= | |gene_alias=- | ||
|gene_description= | |gene_description=long intergenic non-protein coding RNA 2639 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name=LINC02639 | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=ncRNA | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000230573 | ||
|nearest_promoter_id= | |nearest_promoter_id=NR_134490 | ||
|nearest_refseq= | |nearest_refseq=NR_134490 | ||
|nearest_unigene= | |nearest_unigene=Hs.460114 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=3875683 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Revision as of 22:24, 22 June 2023
Basic information about the TSS
|
| |||||||||||||
| Source datasets | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | ||||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | dELS (EH38D2307530,EH38E1443274) |
|---|---|
| Category: | dELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | 41749 |
|---|---|
| Nearest PromoterID: | NR_134490 |
| Entrez ID: | 105376365 |
| Nearest Unigene: | Hs.460114 |
| Nearest Refseq: | NR_134490 |
| Nearest Ensembl: | ENSG00000230573 |
| Gene Name: | LINC02639 |
| Gene Alias: | - |
| Gene Type: | ncRNA |
| CpG%: | 0.031250 |
| GC%: | 0.393939 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |