TSS: Rfhg 124594.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetailV4 |annotation=intron (ENST00000417122.6, intron 1 of 4) |ccre_category=dELS |ccre_description=dELS,CTCF-bound (EH38D2332149,EH38E1460522) |chr=chr10 |cpg_percent=0...") |
No edit summary |
||
| Line 1: | Line 1: | ||
{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=intron ( | |annotation=intron (NM_002211, intron 1 of 15) | ||
|ccre_category=dELS | |ccre_category=dELS | ||
|ccre_description=dELS,CTCF-bound (EH38D2332149,EH38E1460522) | |ccre_description=dELS,CTCF-bound (EH38D2332149,EH38E1460522) | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=L2{{!}}LINE{{!}}L2 | ||
|distance=-95 | |distance=-95 | ||
|distance_to_tss= | |distance_to_tss=3552 | ||
|end=32954344 | |end=32954344 | ||
|entrez_id= | |entrez_id=3688 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.500000 | |gc_percent=0.500000 | ||
|gene_alias= | |gene_alias=CD29{{!}}FNRB{{!}}GPIIA{{!}}MDF2{{!}}MSK12{{!}}VLA-BETA{{!}}VLAB | ||
|gene_description= | |gene_description=integrin subunit beta 1 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name=ITGB1 | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000150093 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_133376 | ||
|nearest_refseq= | |nearest_refseq=NM_002211 | ||
|nearest_unigene= | |nearest_unigene=Hs.643813 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=32954341 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Revision as of 23:06, 22 June 2023
Basic information about the TSS
|
| |||||||||||||
| Source datasets | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | ||||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | dELS,CTCF-bound (EH38D2332149,EH38E1460522) |
|---|---|
| Category: | dELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | 3552 |
|---|---|
| Nearest PromoterID: | NM_133376 |
| Entrez ID: | 3688 |
| Nearest Unigene: | Hs.643813 |
| Nearest Refseq: | NM_002211 |
| Nearest Ensembl: | ENSG00000150093 |
| Gene Name: | ITGB1 |
| Gene Alias: | CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.500000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |