TSS: Rfhg 124997.1: Difference between revisions
From referenceTSS
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|detailed_annotation=Intergenic | |detailed_annotation=Intergenic | ||
|distance= | |distance= | ||
|distance_to_tss= | |distance_to_tss=-192106 | ||
|end=44577206 | |end=44577206 | ||
|entrez_id= | |entrez_id=6387 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.500000 | |gc_percent=0.500000 | ||
|gene_alias= | |gene_alias=IRH{{!}}PBSF{{!}}SCYB12{{!}}SDF1{{!}}TLSF{{!}}TPAR1 | ||
|gene_description= | |gene_description=C-X-C motif chemokine ligand 12 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name=CXCL12 | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000107562 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_001178134 | ||
|nearest_refseq= | |nearest_refseq=NM_000609 | ||
|nearest_unigene= | |nearest_unigene=Hs.522891 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=44577201 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
Revision as of 23:12, 22 June 2023
Basic information about the TSS
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| Source datasets | ||||||||||||||
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| Protocol | ||||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | dELS (EH38D2338472,EH38E1464624) |
|---|---|
| Category: | dELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -192106 |
|---|---|
| Nearest PromoterID: | NM_001178134 |
| Entrez ID: | 6387 |
| Nearest Unigene: | Hs.522891 |
| Nearest Refseq: | NM_000609 |
| Nearest Ensembl: | ENSG00000107562 |
| Gene Name: | CXCL12 |
| Gene Alias: | IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.500000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |