TSS: Rfhg 1265.1: Difference between revisions
From referenceTSS
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |annotation=promoter-TSS (NM_207420) | ||
|ccre_category=pELS | |ccre_category=pELS | ||
|ccre_description=pELS (EH38D2124311,EH38E1316698) | |ccre_description=pELS (EH38D2124311,EH38E1316698) | ||
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.051282 | |cpg_percent=0.051282 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NM_207420) | ||
|distance=0 | |distance=0 | ||
|distance_to_tss=-61 | |distance_to_tss=-61 | ||
|end=9026426 | |end=9026426 | ||
|entrez_id= | |entrez_id=155184 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.600000 | |gc_percent=0.600000 | ||
|gene_alias= | |gene_alias=GLUT-7{{!}}GLUT7 | ||
|gene_description= | |gene_description=solute carrier family 2 member 7 | ||
|gene_id=155184 | |gene_id=155184 | ||
|gene_name= | |gene_name=SLC2A7 | ||
|gene_source=HGNC:13445 | |gene_source=HGNC:13445 | ||
|gene_symbol=SLC2A7 | |gene_symbol=SLC2A7 | ||
|gene_synonyms=GLUT7 | |gene_synonyms=GLUT7 | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:13445 | |hgnc_mgi_id=HGNC:13445 | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000197241 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_207420 | ||
|nearest_refseq= | |nearest_refseq=NM_207420 | ||
|nearest_unigene= | |nearest_unigene=Hs.531239 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=9026387 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Revision as of 23:38, 22 June 2023
Basic information about the TSS
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| Source datasets | ||||||||||||||
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| Protocol | ||||||||||||||
| TSS cluster detected* | 2 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | pELS (EH38D2124311,EH38E1316698) |
|---|---|
| Category: | pELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -61 |
|---|---|
| Nearest PromoterID: | NM_207420 |
| Entrez ID: | 155184 |
| Nearest Unigene: | Hs.531239 |
| Nearest Refseq: | NM_207420 |
| Nearest Ensembl: | ENSG00000197241 |
| Gene Name: | SLC2A7 |
| Gene Alias: | GLUT-7|GLUT7 |
| Gene Description: | solute carrier family 2 member 7 |
| Gene Type: | protein-coding |
| CpG%: | 0.051282 |
| GC%: | 0.600000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.