TSS: Rfhg 126735.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetailV4 |annotation=Intergenic |ccre_category=dELS |ccre_description=dELS,CTCF-bound (EH38D2358976,EH38E1477592) |chr=chr10 |cpg_percent=0.076923 |detailed_annotation=In...") |
No edit summary |
||
Line 7: | Line 7: | ||
|detailed_annotation=Intergenic | |detailed_annotation=Intergenic | ||
|distance= | |distance= | ||
|distance_to_tss=- | |distance_to_tss=-13189 | ||
|end=72260742 | |end=72260742 | ||
|entrez_id= | |entrez_id=54541 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.571429 | |gc_percent=0.571429 | ||
|gene_alias= | |gene_alias=Dig2{{!}}REDD-1{{!}}REDD1 | ||
|gene_description= | |gene_description=DNA damage inducible transcript 4 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name=DDIT4 | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000168209 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_019058 | ||
|nearest_refseq= | |nearest_refseq=NM_019058 | ||
|nearest_unigene= | |nearest_unigene=Hs.744875 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=72260729 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= |
Revision as of 23:42, 22 June 2023
Basic information about the TSS
|
| |||||||||||||
Source datasets | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Protocol | ||||||||||||||
TSS cluster detected* | 1 |
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
Description: | dELS,CTCF-bound (EH38D2358976,EH38E1477592) |
---|---|
Category: | dELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
Distance to TSS: | -13189 |
---|---|
Nearest PromoterID: | NM_019058 |
Entrez ID: | 54541 |
Nearest Unigene: | Hs.744875 |
Nearest Refseq: | NM_019058 |
Nearest Ensembl: | ENSG00000168209 |
Gene Name: | DDIT4 |
Gene Alias: | Dig2|REDD-1|REDD1 |
Gene Type: | protein-coding |
CpG%: | 0.076923 |
GC%: | 0.571429 |
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |