TSS: Rfhg 126930.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|annotation=promoter-TSS (ENST00000399449.3)
|annotation=promoter-TSS (NR_026592)
|ccre_category=PLS
|ccre_category=PLS
|ccre_description=PLS,CTCF-bound (EH38D2360097,EH38E1478429)
|ccre_description=PLS,CTCF-bound (EH38D2360097,EH38E1478429)
|chr=chr10
|chr=chr10
|cpg_percent=0.078431
|cpg_percent=0.078431
|detailed_annotation=processed_transcript-promoter-TSS (ENST00000399449.3)
|detailed_annotation=promoter-TSS (NR_026592)
|distance=0
|distance=0
|distance_to_tss=-5
|distance_to_tss=14
|end=73730518
|end=73730518
|entrez_id=ENSG00000271816
|entrez_id=113939925
|focus_ratio=NA
|focus_ratio=NA
|gc_percent=0.538462
|gc_percent=0.538462
|gene_alias=
|gene_alias=-
|gene_description=
|gene_description=BMS1P4-AGAP5 readthough
|gene_id=729096
|gene_id=729096
|gene_name=BMS1 pseudogene 4
|gene_name=BMS1P4-AGAP5
|gene_source=HGNC:23652
|gene_source=HGNC:23652
|gene_symbol=BMS1P4
|gene_symbol=BMS1P4
|gene_synonyms=OTTHUMG00000018478
|gene_synonyms=OTTHUMG00000018478
|gene_type=processed_transcript
|gene_type=pseudo
|hgnc_mgi_id=HGNC:23652
|hgnc_mgi_id=HGNC:23652
|nearest_ensembl=
|nearest_ensembl=
|nearest_promoter_id=ENST00000580790.1
|nearest_promoter_id=NR_160426
|nearest_refseq=
|nearest_refseq=NR_160425
|nearest_unigene=ENST00000580790
|nearest_unigene=
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|species=human
|species=human
|start=73730466
|start=73730467
|strand=-
|strand=-
|tata_box=
|tata_box=

Revision as of 23:45, 22 June 2023

Basic information about the TSS

TSS ID:rfhg_126930.1
TSS ID(Version3):hg_110106.1
Species:human
Chr:chr10
Start:73730467
End:73730518
Strand:-
Source datasets
Protocol
TSS cluster detected*

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D2360097,EH38E1478429)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000584747.5:0
BC063124:0
BC099910:0
BC046139:0
AK294783:0
GeneID:729096
HGNC/MGI_ID:HGNC:23652
UniProt_ID:
Nearer transcript ids and distances:
    Gene_name:BMS1P4-AGAP5
    Gene_symbol:BMS1P4
    Gene_synonyms:OTTHUMG00000018478
    Gene_source:HGNC:23652



    TATA-Box annotation

    Distance to TSS:14
    Nearest PromoterID:NR_160426
    Entrez ID:113939925
    Nearest Unigene:
    Nearest Refseq:NR_160425
    Nearest Ensembl:
    Gene Name:BMS1P4-AGAP5
    Gene Alias:-
    Gene Type:pseudo
    CpG%:0.078431
    GC%:0.538462
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



    TSS expression

    Expression data not found.
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