TSS: Rfhg 127017.1: Difference between revisions
From referenceTSS
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation= | |annotation=exon (NM_003373, exon 16 of 21) | ||
|ccre_category=dELS | |ccre_category=dELS | ||
|ccre_description=dELS (EH38D2360530,EH38E1478807) | |ccre_description=dELS (EH38D2360530,EH38E1478807) | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.030675 | |cpg_percent=0.030675 | ||
|detailed_annotation= | |detailed_annotation=exon (NM_003373, exon 16 of 21) | ||
|distance=30 | |distance=30 | ||
|distance_to_tss= | |distance_to_tss=45626 | ||
|end=74105284 | |end=74105284 | ||
|entrez_id= | |entrez_id=26985 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.567073 | |gc_percent=0.567073 | ||
|gene_alias= | |gene_alias=- | ||
|gene_description= | |gene_description=adaptor related protein complex 3 subunit mu 1 | ||
|gene_id=7414 | |gene_id=7414 | ||
|gene_name= | |gene_name=AP3M1 | ||
|gene_source=HGNC:12665 | |gene_source=HGNC:12665 | ||
|gene_symbol=VCL | |gene_symbol=VCL | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:12665 | |hgnc_mgi_id=HGNC:12665 | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000185009 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_012095 | ||
|nearest_refseq= | |nearest_refseq=NM_012095 | ||
|nearest_unigene= | |nearest_unigene=Hs.500104 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=74105121 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
Revision as of 23:47, 22 June 2023
Basic information about the TSS
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| Source datasets | ||||||||||||||
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| Protocol | ||||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | dELS (EH38D2360530,EH38E1478807) |
|---|---|
| Category: | dELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 45626 |
|---|---|
| Nearest PromoterID: | NM_012095 |
| Entrez ID: | 26985 |
| Nearest Unigene: | Hs.500104 |
| Nearest Refseq: | NM_012095 |
| Nearest Ensembl: | ENSG00000185009 |
| Gene Name: | AP3M1 |
| Gene Alias: | - |
| Gene Type: | protein-coding |
| CpG%: | 0.030675 |
| GC%: | 0.567073 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.