TSS: Rfhg 128866.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetailV4 |annotation=Intergenic |ccre_category=dELS |ccre_description=dELS (EH38D2379126,EH38E1491319) |chr=chr10 |cpg_percent=0.000000 |detailed_annotation=Intergenic |d...") |
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|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=THE1D{{!}}LTR{{!}}ERVL-MaLR | ||
|distance= | |distance= | ||
|distance_to_tss=- | |distance_to_tss=-12767 | ||
|end=96737504 | |end=96737504 | ||
|entrez_id= | |entrez_id=728658 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.545455 | |gc_percent=0.545455 | ||
|gene_alias= | |gene_alias=RPL13A_8_1086{{!}}bA196N24.2 | ||
|gene_description= | |gene_description=ribosomal protein L13a pseudogene 5 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name=RPL13AP5 | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=pseudo | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000236552 | ||
|nearest_promoter_id= | |nearest_promoter_id=NR_026712 | ||
|nearest_refseq= | |nearest_refseq=NR_026712 | ||
|nearest_unigene= | |nearest_unigene=Hs.645344 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=96737494 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
Revision as of 00:17, 23 June 2023
Basic information about the TSS
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| Source datasets | ||||||||||||||
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| Protocol | ||||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | dELS (EH38D2379126,EH38E1491319) |
|---|---|
| Category: | dELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -12767 |
|---|---|
| Nearest PromoterID: | NR_026712 |
| Entrez ID: | 728658 |
| Nearest Unigene: | Hs.645344 |
| Nearest Refseq: | NR_026712 |
| Nearest Ensembl: | ENSG00000236552 |
| Gene Name: | RPL13AP5 |
| Gene Alias: | RPL13A_8_1086|bA196N24.2 |
| Gene Type: | pseudo |
| CpG%: | 0.000000 |
| GC%: | 0.545455 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |