TSS: Rfhg 131049.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |annotation=promoter-TSS (NR_120495) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS,CTCF-bound (EH38D2400781,EH38E1505981) | |ccre_description=PLS,CTCF-bound (EH38D2400781,EH38E1505981) | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.250000 | |cpg_percent=0.250000 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NR_120495) | ||
|distance=215 | |distance=215 | ||
|distance_to_tss=-30 | |distance_to_tss=-30 | ||
|end=121928097 | |end=121928097 | ||
|entrez_id= | |entrez_id=11101 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=1.000000 | |gc_percent=1.000000 | ||
|gene_alias= | |gene_alias=- | ||
|gene_description= | |gene_description=arginyltransferase 1 | ||
|gene_id=100130887 | |gene_id=100130887 | ||
|gene_name=ATE1 | |gene_name=ATE1 | ||
|gene_source=HGNC:49496 | |gene_source=HGNC:49496 | ||
|gene_symbol=ATE1OSP | |gene_symbol=ATE1OSP | ||
|gene_synonyms=ENST00000437593 | |gene_synonyms=ENST00000437593 | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:49496 | |hgnc_mgi_id=HGNC:49496 | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000107669 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_001001976 | ||
|nearest_refseq= | |nearest_refseq=NM_007041 | ||
|nearest_unigene= | |nearest_unigene=Hs.632080 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=human | |species=human | ||
|start= | |start=121928089 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
Revision as of 00:56, 23 June 2023
Basic information about the TSS
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| Source datasets | ||||||||||||||
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| Protocol | ||||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D2400781,EH38E1505981) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -30 |
|---|---|
| Nearest PromoterID: | NM_001001976 |
| Entrez ID: | 11101 |
| Nearest Unigene: | Hs.632080 |
| Nearest Refseq: | NM_007041 |
| Nearest Ensembl: | ENSG00000107669 |
| Gene Name: | ATE1 |
| Gene Alias: | - |
| Gene Type: | protein-coding |
| CpG%: | 0.250000 |
| GC%: | 1.000000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.